Pontivivens ytuae: I0K15_19975
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Entry
I0K15_19975 CDS
T06919
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
poz
Pontivivens ytuae
Pathway
poz03030
DNA replication
poz03410
Base excision repair
poz03420
Nucleotide excision repair
poz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
poz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I0K15_19975 (ligA)
03410 Base excision repair
I0K15_19975 (ligA)
03420 Nucleotide excision repair
I0K15_19975 (ligA)
03430 Mismatch repair
I0K15_19975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poz03032
]
I0K15_19975 (ligA)
03400 DNA repair and recombination proteins [BR:
poz03400
]
I0K15_19975 (ligA)
Enzymes [BR:
poz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I0K15_19975 (ligA)
DNA replication proteins [BR:
poz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I0K15_19975 (ligA)
DNA repair and recombination proteins [BR:
poz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I0K15_19975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I0K15_19975 (ligA)
MMR (mismatch excision repair)
DNA ligase
I0K15_19975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I0K15_19975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QPH54018
UniProt:
A0A7S9QCB3
LinkDB
All DBs
Position
complement(3997252..3999357)
Genome browser
AA seq
701 aa
AA seq
DB search
MADTQNIDDLTRAEAEQRLAELATRMNAADAAYHQADDPIISDAEYDRLKAEVLAIEARF
PDLTRADSPSKKVGAAPSDAFGKVRHRVAMLSLSNLFEAEEVAEFDTRIRRFLGTEDPIA
YTAEPKIDGLSLSLRYESGRLVEAATRGDGETGENVTANARTIDDIPETLDGAPDTLEVR
GEVYMSHADFQALNARQEEAGNKVFANPRNAAAGSLRQLDSSITAARPLRFFAYAWGEIS
SPLAETQSGAIERLAQLGFQTNPLTKLCKSAEEMLTHYDAIAAARPDLGYDIDGVVYKVD
DLALQRRLGFRSNNPRWATAHKFPAEVAVTTLTGIEIQVGRTGALSPVARLDPVTVGGVV
VSNATLHNADYIAGRDSKGEPIREGRDIRVGDTVEIYRAGDVIPKVRDVILDRRPADAAP
YEFPETCPACGSPAIREPGEAVHRCTGALICPAQAVEKLKHFVSRMAFDIEGLGAKQVEA
FYEDEWIRTPADIFALEERFGSGLRQLKNREGWGEKSAQNLFAAIRERRTIPLNRLIFGL
GIRHVGETTAMLLARHYGSWAAFREAMEAAVPDSAERAELIAIDGVGPVLAEAIADFFAE
PAAKDLLDNLLAYLTVEDVAAPATEGSPVAGKIVVFTGTLEKMTRAEAKARAEALGAKVS
GSVSKKTDIVIAGPGAGSKETKARELGVEILSEDDWLALIG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacacgcagaacatcgacgacctgacccgggcggaggcggagcaacgccttgcc
gagcttgccacgcggatgaacgccgcggatgccgcgtaccatcaggccgacgaccccatc
atctcggacgccgaatacgaccggctgaaggccgaagttctggccatcgaggcccgcttt
cccgacctcacgcgagccgacagcccgtcgaagaaggtgggcgccgccccctccgacgcc
ttcggcaaggtccgccaccgcgtcgcgatgctctcgctctccaacctgttcgaggccgag
gaggtcgcggagttcgacacccgcatccgccgcttcctcggcaccgaggaccccatcgcc
tacaccgcagagcccaagatcgacggcctctcgctcagcctgcgttacgagagcggccgc
ctggtggaggccgcgacccgcggcgatggcgagaccggggagaacgtcaccgcgaacgcc
cgcaccatcgacgacattcccgaaacgctcgacggcgcgcccgatactctcgaggtccgg
ggcgaggtatatatgagccatgccgacttccaggcgctcaatgcccggcaggaggaggcg
ggaaacaaggtcttcgccaacccgcgcaacgccgccgccggatcgcttcgccagctcgac
tcgagcatcactgccgcacgcccgctgcgcttcttcgcctatgcgtggggtgagatctca
tctccgctggccgaaacccaatccggcgccattgaacgccttgcccagctcggcttccag
accaacccgctgacgaagctctgcaaaagtgccgaggagatgctgacgcattacgacgcc
atcgccgccgcgcgccccgatctcggctacgacatcgacggtgtggtctacaaggtcgac
gacctcgcactgcagcgccgcctcggcttccgctccaacaatccccgctgggcgacggcg
cacaaattcccggcggaggtcgcggtcacgacgctgacggggatcgagatccaggtcggt
cgcaccggcgcgctctcccccgtcgcccggctcgatccggtcacggtgggcggcgtcgtc
gtctccaacgccaccctgcacaacgccgactacatcgccgggcgcgacagcaagggtgag
ccgatccgcgagggccgcgacatccgtgtcggcgacacggtggagatctaccgcgccggc
gacgtgatccccaaggtccgcgacgtgatcctcgaccgtcgcccggccgacgccgcccct
tacgaattccccgaaacctgccccgcctgcggctcccccgcgatccgcgaacccggcgag
gccgtccaccgctgcaccggcgcgctgatctgcccggcccaggcggtggagaagctcaag
cacttcgtctcccgcatggcgttcgacatcgaggggctgggcgcgaagcaggtcgaggcg
ttctacgaagacgagtggatccgcacccccgccgacatcttcgcgctggaggagcgcttc
ggctccggcctgcgccagctcaagaaccgcgagggctggggcgagaaatcggcgcagaac
ctcttcgccgcgatccgggagcggcgcacgatcccgctcaaccgcctgatcttcggcctc
ggcatccgccatgtgggcgagacgacggcgatgctcctcgcccgccactacggtagctgg
gcggcgttccgcgaggccatggaggccgccgtgccggacagtgccgagcgggccgagctg
attgccattgacggcgtcggcccggtgctggccgaggccatcgcggatttcttcgcagaa
cccgccgcgaaggacctgctcgacaacctgctcgcctatctcaccgtcgaggatgtcgcc
gccccggccaccgagggctcgcccgtcgccggcaagatcgtggttttcaccggcacgctg
gaaaagatgacccgggccgaggcgaaggcccgggccgaggcgctcggcgccaaggtctcc
ggctccgtctcaaagaagaccgatatcgtgatcgcggggcccggcgcaggctcgaaggag
acgaaggcgcgcgagctcggcgtcgagatcctcagcgaggatgactggctcgcgctcatc
ggctga
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