KEGG   Komagataella phaffii: PAS_chr1-1_0014
Entry
PAS_chr1-1_0014   CDS       T01092                                 
Name
(RefSeq) Lsm (Like Sm) protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
ppa  Komagataella phaffii
Pathway
ppa03018  RNA degradation
ppa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PAS_chr1-1_0014
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAS_chr1-1_0014
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr1-1_0014
   03041 Spliceosome [BR:ppa03041]
    PAS_chr1-1_0014
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PAS_chr1-1_0014
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PAS_chr1-1_0014
Spliceosome [BR:ppa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PAS_chr1-1_0014
 Complex C
  U2 snRNP components
    PAS_chr1-1_0014
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 8197531
NCBI-ProteinID: XP_002489648
UniProt: C4QVU4
LinkDB
Position
1:complement(564668..564922)
AA seq 84 aa
MSVSEPLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNELK
TQTKDRPMVYLRGDSVILVANASQ
NT seq 255 nt   +upstreamnt  +downstreamnt
atgtcggtatccgagccactcaatatgatcaagctttgccttgacgaaaaggtctacgtt
aaattacgaggagcacgtgagattgttggaaaactacatgcatatgacaatcattgtaat
ttggtgttgggagacgccgtagagactatatctacagtagatgaaaacaacgagctaaag
acacagacaaaagacagaccaatggtttatctaagaggtgattcagtaattttagtggca
aatgccagccaatag

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