Komagataella phaffii: PAS_chr1-1_0014
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Entry
PAS_chr1-1_0014 CDS
T01092
Name
(RefSeq) Lsm (Like Sm) protein
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr1-1_0014
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr1-1_0014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-1_0014
03041 Spliceosome [BR:
ppa03041
]
PAS_chr1-1_0014
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PAS_chr1-1_0014
mRNA degradation factors
5'-3' decay
Lsm complex
PAS_chr1-1_0014
Spliceosome [BR:
ppa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PAS_chr1-1_0014
Complex C
U2 snRNP components
PAS_chr1-1_0014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
8197531
NCBI-ProteinID:
XP_002489648
UniProt:
C4QVU4
LinkDB
All DBs
Position
1:complement(564668..564922)
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AA seq
84 aa
AA seq
DB search
MSVSEPLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNELK
TQTKDRPMVYLRGDSVILVANASQ
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtatccgagccactcaatatgatcaagctttgccttgacgaaaaggtctacgtt
aaattacgaggagcacgtgagattgttggaaaactacatgcatatgacaatcattgtaat
ttggtgttgggagacgccgtagagactatatctacagtagatgaaaacaacgagctaaag
acacagacaaaagacagaccaatggtttatctaagaggtgattcagtaattttagtggca
aatgccagccaatag
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