Komagataella phaffii: PAS_chr1-4_0366
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Entry
PAS_chr1-4_0366 CDS
T01092
Name
(RefSeq) Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr1-4_0366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-4_0366
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PAS_chr1-4_0366
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Ortholog
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GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
SMC_N
RsgA_GTPase
AAA_23
T2SSE
AAA_15
AAA_7
Rad17
MMR_HSR1
AAA_16
SRP54
ORC-CDC6-like
AAA
PduV-EutP
AAA_22
Arf
Dynamin_N
AAA_28
AAA_33
AAA_27
AAA_25
AAA_14
AAA_30
nSTAND3
AAA_5
Motif
Other DBs
NCBI-GeneID:
8197814
NCBI-ProteinID:
XP_002490490
UniProt:
C4QY86
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Position
1:2081950..2082882
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AA seq
310 aa
AA seq
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MSNPQSPFSLDIKNLSYAFPNKKVGLSHINLQIPHQSKVLLVGPNGAGKSTLLKVLSGQK
LVKEGSVLVNGHDPFELGATSIPGVVTYLGTEWANNEIVKRDVPVTVLVASVGGDDYAER
RDHLVDILDIDVKWRMNQCSDGERRRVQLCMGLLKPWDLLLLDEVTIDLDVLVRSRLLEF
LTQETETRKATVVYATHIFDGLANWPTRVVHLRGGQLVDHFEMSQIQFTEPTESFKTDPT
VAGNQVRIPRTNSLHPLALHWLTKDLKDRGERSEDKTRPRWNDQSQHDENVYYRDSESIT
SYFKTTRTVR
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatccccaatcaccgttctcattggatatcaagaacctcagctatgcattccct
aataagaaagttggtctcagccatattaaccttcagatacctcaccagtccaaagtactg
ttggtgggacccaatggtgctggaaagagcactcttttaaaggtgttatcaggtcagaaa
ttggtaaaggagggttccgttctggtcaatgggcatgatccatttgaacttggcgcaacc
agtattcctggagtcgttacgtacttaggtacagaatgggctaataatgaaatagtcaag
agagacgttccagttactgtcctagttgctagcgttggtggagatgactatgcggagaga
agggaccatctggtcgacattttagatattgatgtgaaatggcgtatgaatcaatgcagt
gatggagaacgtcgccgggttcagctgtgcatggggttactcaaaccttgggacctgctg
ctgttggacgaagtaaccattgatttggatgtgctggtgcgaagtcgtttattggagttc
ttgactcaggagacagaaacaagaaaggctacggttgtttatgccactcacatatttgac
ggattggccaattggcccactagggtggtgcatttgcgaggaggtcaattggtggaccac
tttgaaatgtcacaaatccagttcaccgagcctacagagtcattcaaaacggatccaacg
gttgcaggcaatcaagtacgaattccaagaacaaacagcctacacccattggcattacat
tggctaactaaggatctcaaggatcgtggggaacgttccgaagataagacaagaccgagg
tggaatgaccagtcccagcatgacgaaaacgtatactaccgtgactccgaaagtataaca
tcttacttcaagacgacaagaaccgtacggtaa
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