Komagataella phaffii: PAS_chr3_0732
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Entry
PAS_chr3_0732 CDS
T01092
Name
(RefSeq) DNA ligase required for nonhomologous end-joining (NHEJ)
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PAS_chr3_0732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr3_0732
Enzymes [BR:
ppa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PAS_chr3_0732
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PAS_chr3_0732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
8200427
NCBI-ProteinID:
XP_002492960
UniProt:
C4R5E5
LinkDB
All DBs
Position
3:complement(1394459..1397257)
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AA seq
932 aa
AA seq
DB search
MSEELKEPKNRAPLPNFSHLVYDLFEKLDTCVKSPHIPESLRSRKTKIIEQFVQKWRFEI
GDNIYPASRLIFPNLDKRHYNIKDFTLIKFILDIFQVPKDSEDTKILRNWKGKYENRMRS
NKNDLAQLLTGVIKARRGAVLDRPEISIDRLNELLDTMTRPETKPSDQKKILTEIFNHVD
NIELKWFLRILLKRKLMGGMDFTFFRQWHPDAVELLQLVNDLKTVFWELTDRLIPLPEAG
RVIRVGRAFRPQLAMRPNRTYDQIATLFDNNFYIEDKLDGERILIHISLNDTTQQHEFKY
FSRSGTDYTYLYGSNYEEGAFSPFIKGCFIDLKDDTKEIRSMVLDGEFLVYDNKRNVILP
FGALKSASLTRLMEEKNDSEDSQETQVYFVVYDLVFLNGTSFQDKALKVRRNLLNKILAN
PIPNRIEVIKYTEGHVGSDIEAAMRSAIHDNREGIVVKNPKSKYYIASRNLNWVKIKPEY
LEEFGENIDLIILGKRKGLKNAYICGLRESLGNDRYRFLSLARIANGFTGQMYEEIEHSL
GSKWVNIRKTQPPYPYIDLGEISSMVDYWVDPKESVVLEIKARSIDIGDGGKRYAAGTTL
YNAYCVRIRSDKDFLSCSTFADYKEIKTSKSRHKTEKTHSLMSKRKRTIVTEPILAKQSV
SSKSSIFKDYIFYVLSDMLGEKRYSIAQLEALLVENGGRITKNDCVALADGERLVLLSDK
ITFKVTEYFNKGLNVFRPGFILKCLQLKTIIPLQINDILLADESLIEKVKKNSDRFGDSY
TSPIDRKELRMLMKGIPKIKLEHPLKFPLLYNLFKGLKFYIARPCYRSPFLTNVMSPYLL
EVIVILGGFLTTDIFQCSFIIVDTSTTFNYSWLTEEATIQDEVGSLRKKLGDDLPIVKGV
LDKVPRIVEKEWVFKCIQEGTIVAADGYNYIG
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagagttgaaggagccaaaaaacagagcccctttacctaatttcagccatcta
gtttatgaccttttcgaaaaattggatacatgtgtcaaatcgcctcatattcctgaatct
ctcagaagtcgaaagaccaagataatagagcagtttgtccaaaaatggagatttgagata
ggtgataacatatatcctgcctcaagacttatttttcccaatttagataagcgtcactat
aatatcaaggattttacattgatcaagttcatattggacatcttccaagttccaaaagac
tccgaagatacgaagattttacgtaactggaaagggaagtatgagaatagaatgcgctcc
aacaaaaatgatctagctcaattactcactggagttattaaagctaggagaggtgctgtt
ttggatcggccagaaatttctattgacagactgaacgaacttttggatacaatgactcgc
cctgaaacaaaaccgtctgaccaaaaaaagattttgacggagattttcaatcatgtagat
aatattgaactgaaatggtttcttcggatcctactgaaaaggaagttaatgggtggtatg
gattttactttttttaggcagtggcatccagatgctgtagaattacttcaactggttaat
gacctgaaaactgtattctgggaactgactgatcggttgattccattgcctgaagcgggc
agagtcatcagagttgggcgtgcattcaggcctcaactggcaatgcgacccaatagaact
tacgatcaaatagctactctatttgacaataatttctacattgaagataaactagatggc
gaacggattttgatacacatcagcttgaatgacacaacccaacaacatgaattcaagtac
ttttcaaggagtggaactgactatacatatttatacgggtcaaactacgaagaaggtgca
ttctctcctttcatcaaaggttgcttcatagatctcaaagatgacacaaaagaaatccga
tctatggttttggatggggagtttctcgtttatgataacaaaagaaatgttattctcccc
tttggggctctcaagagtgccagtttaacgagattgatggaggagaaaaacgattcggaa
gactctcaagagacgcaagtgtatttcgttgtttatgatcttgtattcttaaatggtaca
tcatttcaagacaaagctctcaaggtaaggcggaatttactgaataaaattcttgcaaat
ccaatccctaacagaatagaagttatcaaatacacggagggtcatgtcggatcggatatc
gaagctgccatgagaagtgctatacacgacaatcgtgaaggaatcgtagtgaagaatcca
aaatcaaagtattatattgcatccagaaatctcaactgggtcaagataaaacctgagtac
ttggaagaatttggagaaaatatagatttgattattctaggcaaaagaaaaggactgaaa
aacgcctatatctgtggactcagagagagtcttggtaatgaccggtacagattcttgtca
ctggccagaattgccaatggatttacagggcaaatgtatgaagaaattgaacattcactg
gggagtaaatgggtcaatataaggaagacgcaaccaccttatccatacattgatctcgga
gagatatcatcgatggtggactattgggttgatcccaaagaatctgtcgttttagagatc
aaggctcgttcaattgatattggtgatggcgggaaacgttacgcagctggtaccactctt
tacaatgcgtattgtgtaagaattagatctgataaagacttcttatcatgttcgactttt
gcagattacaaagaaataaaaacttcaaagagtagacacaaaacagagaaaacacacagt
ctaatgagtaaacgaaagaggacaatagtcactgaaccaattctcgctaaacaaagtgta
tcttcgaagagcagcatattcaaggattacatcttttatgttttaagtgacatgttgggt
gaaaaacgatactctattgctcagctggaggctttgctggtcgagaatggtggcagaata
actaagaatgattgcgtagctcttgcagatggcgagaggcttgttttacttagtgacaag
attactttcaaagtcacagagtactttaataaaggtctaaatgtctttcgaccaggcttc
attctgaagtgtcttcagctgaaaactataattcctctacaaattaacgacatattactg
gcggatgagtctttgatagaaaaggtaaagaaaaactccgaccgatttggggatagttat
acctctcccattgaccgtaaggagttgcgaatgcttatgaaaggtatacctaagataaag
ttagaacacccactaaaatttccactactgtacaacttgttcaagggcctgaagttttat
atcgcaagaccatgctatagatctccatttctgacaaatgttatgagtccatacttgtta
gaagtaatagtgattctaggaggatttcttacaactgatattttccaatgttcatttata
atcgtggatacttccaccacattcaactattcctggttgactgaggaggcgaccatacag
gatgaagttgggtctctaagaaaaaagctgggtgatgatctaccaatcgtcaaaggtgtt
ctagataaagtaccccggatagtagagaaagagtgggtgttcaaatgtatccaggaaggg
acaatcgttgctgcggatggctataactatatcggttaa
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