KEGG   Komagataella phaffii: PAS_chr4_0436
Entry
PAS_chr4_0436     CDS       T01092                                 
Name
(RefSeq) RING finger containing subunit of Skp1-Cullin-F-box ubiquitin protein ligases (SCF)
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
ppa  Komagataella phaffii
Pathway
ppa03420  Nucleotide excision repair
ppa04111  Cell cycle - yeast
ppa04120  Ubiquitin mediated proteolysis
ppa04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    PAS_chr4_0436
   04120 Ubiquitin mediated proteolysis
    PAS_chr4_0436
  09124 Replication and repair
   03420 Nucleotide excision repair
    PAS_chr4_0436
 09140 Cellular Processes
  09143 Cell growth and death
   04111 Cell cycle - yeast
    PAS_chr4_0436
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ppa04121]
    PAS_chr4_0436
   03400 DNA repair and recombination proteins [BR:ppa03400]
    PAS_chr4_0436
Enzymes [BR:ppa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     PAS_chr4_0436
Ubiquitin system [BR:ppa04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   PAS_chr4_0436
  Multi subunit type E3
   SCF complex
    Ring finger protein
     PAS_chr4_0436
   Cul2 complex
     PAS_chr4_0436
   Cul3 complex
     PAS_chr4_0436
   Cul4 complex
     PAS_chr4_0436
   Cul7 complex
     PAS_chr4_0436
   Cul8 complex
     PAS_chr4_0436
   Cul9 complex
     PAS_chr4_0436
DNA repair and recombination proteins [BR:ppa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      PAS_chr4_0436
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      PAS_chr4_0436
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4_2 zf-C3HC4 PHD_NSD zf_RING_Vps8_fungal zf-HC5HC2H_2 zf-Nse
Other DBs
NCBI-GeneID: 8200718
NCBI-ProteinID: XP_002493866
UniProt: C4R7W2
LinkDB
Position
4:join(857861..857996,858047..858168,858222..858320)
AA seq 118 aa
MKWRLMYQVSILLKVLFAPATNISDGQEKKRFEVKKWTAVAFWSWNMVVETCAICRNHLM
EPCIDCQPNSTSQSNIECATAWGTCNHAFHMHCITRWLKTRNVCPLDNGEWVLQKYGN
NT seq 357 nt   +upstreamnt  +downstreamnt
atgaaatggaggttgatgtaccaggtaagcattcttttaaaggttctgtttgcaccagct
actaacatctcagatggacaggagaagaaacgatttgaagtcaaaaagtggacagcagtg
gcgttctggtcctggaatatggtcgtggaaacttgtgccatttgcagaaaccatctgatg
gagccgtgtattgattgccagccaaacagtacctcccaaagcaatatcgaatgtgccaca
gcttggggaacttgtaatcatgccttccacatgcattgtatcacaagatggcttaagact
agaaatgtttgtcctctagataacggagaatgggttctacaaaaatatggaaactag

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