Paenibacillus pabuli: KET34_30880
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Entry
KET34_30880 CDS
T09669
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppab
Paenibacillus pabuli
Pathway
ppab03030
DNA replication
ppab03410
Base excision repair
ppab03420
Nucleotide excision repair
ppab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KET34_30880 (ligA)
03410 Base excision repair
KET34_30880 (ligA)
03420 Nucleotide excision repair
KET34_30880 (ligA)
03430 Mismatch repair
KET34_30880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppab03032
]
KET34_30880 (ligA)
03400 DNA repair and recombination proteins [BR:
ppab03400
]
KET34_30880 (ligA)
Enzymes [BR:
ppab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KET34_30880 (ligA)
DNA replication proteins [BR:
ppab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KET34_30880 (ligA)
DNA repair and recombination proteins [BR:
ppab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KET34_30880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KET34_30880 (ligA)
MMR (mismatch excision repair)
DNA ligase
KET34_30880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KET34_30880 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
DNA_ligase_ZBD
RUBY_RBDX
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UPK43426
LinkDB
All DBs
Position
complement(6757909..6759927)
Genome browser
AA seq
672 aa
AA seq
DB search
MDPMHRMEQLVNELNQHNYQYYTMDQPQISDKEYDLLYDELVTLEQESGMVLPDSPTQRV
GGELLKGFTPHRHLSSLWSLDKAQNIEQLRNWNTRVLKLINDYNTKNPDNPLPEPGYVIE
LKFDGLTLNLTYTNGELVQASTRGNGTVGEGILAQVRTIKSVPLKIPYTGGTIEVQGEGI
MNLSVLNRYNETAAEPLKNARNAAAGALRNLNPKTTAERRLNAYFYNVGYSDDIQFANHQ
EMMDFLRENRFKVNPSITYFHEFDDVMEQLAAIQESRGQLDYLIDGAVIKITDMRTREVL
GYTDKFPRWAVAYKFEAEETTTVLNSVVWNVGRTGKVTPLARVEPVELAGVTVQNCTLNN
VGDIERKNLKFALGTRVFIRRSNDVIPEILGKVTEESDGEEIVFPEQCPACGFPLEQRGA
HLFCNNKLACKPQTVARISHFASRDAMDIETFSEKTAIQLYDELNVREPADLYTLQFDDL
VKLERFGEKKANNLIAALEQSKDRDLASFLYSLGIPNTGKSTTRMLADHYRDLHAIMNAT
AEELVELPDVGGIVAESIVNFFADPFTQAAIEKMLNLGVKAQAPEAPAAIVEDSFFSGKT
VVLTGTLHQLTREEATQRLEALGAKVTGSVSKKTDLVIAGEKAGSKLTKAHDLGIPTIED
EDELVRLLNPQG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggacccgatgcaccggatggagcagcttgttaacgagctgaatcagcataactatcag
tactacacgatggatcagccgcagatcagcgacaaggagtatgatcttctgtacgacgaa
ctggttacgctggaacaggagagtggcatggttttacctgattctccgacacagcgtgtg
ggtggtgaactgctcaaagggtttacaccgcatcgccatttatcctcattgtggagtttg
gacaaagcccagaatatagagcagctgcgaaactggaatacgcgtgtgctcaagctaatt
aatgactacaacaccaaaaatccagataatccgttgcccgaaccgggttatgtcattgag
ctgaagtttgacggtctgaccctgaatctaacgtacacaaacggtgagttggttcaagcc
tctacgcgtgggaacggcactgtaggggagggtattttggctcaggttagaacgattaaa
tctgttccgctcaaaatcccgtatacaggcggtacgattgaagtccaaggtgaaggcatc
atgaacctgtctgtattgaatcgatataatgaaacggcagcagagccgctcaaaaacgct
cggaatgccgcagcaggagcactgcgcaatttgaatccgaagactacagctgaacggcgg
ttgaacgcctatttctataatgtaggttattcggatgatattcagtttgccaaccatcag
gagatgatggactttctccgtgagaatcgattcaaagtcaatccatccattacatatttc
catgagtttgatgatgtgatggagcagcttgcagcgatacaagagagccgtggtcaactg
gactacctgatcgatggagctgttatcaaaattacagacatgcgcacccgtgaggtattg
ggttacacggataagttcccccgttgggcggtagcgtacaaattcgaggcggaagagacc
acgaccgttctgaactctgttgtctggaatgtgggtcgtactggcaaagtgactccgctt
gctcgtgtagaaccggttgagctggccggggtaacggtacagaactgtacattgaataac
gtgggtgacattgagcgtaagaatttgaagttcgccttgggtacacgtgtctttatccgt
cgttccaacgatgtcattcctgaaatcttgggtaaagtgactgaagaaagtgacggcgag
gagattgtattccctgagcagtgtccggcatgtggatttcctttggaacagcgtggagcg
catttattttgtaacaacaaactggcgtgcaaaccgcagacggtggcccgtatttctcac
tttgcttcacgtgatgcaatggacatcgagacgtttagcgagaaaacggcgattcagctg
tacgatgaattgaacgtgcgtgagccggctgacctgtatacgttgcaatttgatgatctg
gtcaagctcgaacggtttggtgaaaagaaggcaaacaaccttattgctgccctggagcag
agcaaggaccgtgacctcgcttcgttcctgtactcactgggaattccgaatacaggtaaa
tcaactacacgcatgctggctgatcattaccgtgacctgcatgccattatgaatgcaacg
gcagaggagctcgttgaacttccggacgtaggcggcattgttgccgagagcattgtgaat
ttctttgccgatccgtttacccaggcggccatcgagaagatgctgaatttgggcgtaaaa
gctcaagcgcctgaggcaccagcagcgattgtggaagattccttcttcagtggcaaaacg
gtcgtgctcaccggaacgctgcaccaactcacgcgcgaagaggcaacgcagcggctggaa
gctctaggagcgaaggtaacgggcagtgtctccaaaaagacagacctcgttattgccgga
gagaaggctggctccaaactgaccaaagcccatgatctcggcattcctaccattgaggat
gaggacgaacttgtacgtcttttgaatccacaaggataa
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integrated database retrieval system
