Pseudomonas palleroniana: LDL65_03090
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Entry
LDL65_03090 CDS
T09728
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppae
Pseudomonas palleroniana
Pathway
ppae03030
DNA replication
ppae03410
Base excision repair
ppae03420
Nucleotide excision repair
ppae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDL65_03090 (ligA)
03410 Base excision repair
LDL65_03090 (ligA)
03420 Nucleotide excision repair
LDL65_03090 (ligA)
03430 Mismatch repair
LDL65_03090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppae03032
]
LDL65_03090 (ligA)
03400 DNA repair and recombination proteins [BR:
ppae03400
]
LDL65_03090 (ligA)
Enzymes [BR:
ppae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LDL65_03090 (ligA)
DNA replication proteins [BR:
ppae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LDL65_03090 (ligA)
DNA repair and recombination proteins [BR:
ppae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LDL65_03090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LDL65_03090 (ligA)
MMR (mismatch excision repair)
DNA ligase
LDL65_03090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LDL65_03090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
Tla3_C
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UOP11566
LinkDB
All DBs
Position
complement(665854..668211)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTRDSPTQ
RVGSAALSAFTQVRHEIPMLSLGNAFDESTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DTHIGNLQQLQKWGMPISRELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFKVNSIAS
QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVLERRPENARAVQVPESCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYKLKYEQIIDLEGFADISSKKLITAIENSKTPTLARFIYALGIPDVGEET
AKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPQECGL
QLQDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFGTLEGVIKADWLDMRQAL
PEKQAKAVRDFFDNAGNATHALAIEQQLKDFGMHWQSEKKVIEGLPEAGHTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEAAFVAFLAK
HNIPA
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccatacccgtatcctcgaattgcgcgctgaactggatcagcacaactac
cgctaccacgtcctcgacgagccgagcattccggacgccgagtacgaccgcttgttccat
gagctcaaggccctggaggccgagcatccggaactggtgacgcgtgattcaccgacgcag
cgggtcggcagtgcggcgttgtcggcgttcacccaggtcaggcatgagatcccgatgctc
agcctgggcaacgcgttcgatgaatccaccatgcttgaattcgatcgccgggtcaccgag
ggcctcgatctgccggtgggcgatctgtttgggggcggcgcggcggtggagtacagctgt
gaaccgaaactggatggcctggcggtcagcctgctttatcaagacggcgaattggtgcgc
ggcgcgacccgtggcgatggcaccactggtgaagatatcagcgtcaacgtgcgcaccgtg
cgcaatatcccgctgaagctgcacggcagcggctggccggcgaccctggaagtgcgcggc
gaagtgttcatgtccaaggccggtttcgagcgtctcaacgcgtcgcaactggaagtgggc
ggtaagaccttcgccaacccgcgcaacgccgccgccggcagcctgcgccagctggactcg
aagatcaccgccagccgtccgctggagttctgctgctacggtgtgaccaccgatatcagc
gacacccatatcggcaacctgcagcagttgcagaagtggggcatgccgatcagccgcgag
ttgaagctggccaagggcattcaggattgcctggattactaccgcgatattggcgagcgg
cgtaacagcctgccctatgaaatcgacggtgtggtgttcaaggtcaacagcattgcctcc
cagcgtgaactgggcttccgtgcccgcgaaccgcgctgggccatcgctcataaattcccg
gccatggaagagttgaccgagctgctcgacgtggaattccaggtcggtcgcaccggtgcg
gtgacaccggtggcgcgcctgaaaccggtgaaggtggccggtgtgaccgtgtccaatgcg
accttgcacaatatggatgaggtggcgcggttgggcctgatgatcggcgatacggtgatt
atccgtcgtgccggggatgtgatcccgcaggtggtttcggtggtacttgagcgtcgcccg
gaaaacgcccgcgccgttcaggtgcccgagagctgcccggtgtgtggctcccatgtggag
cgcacgcagttggtcaagcgcagcaaaggcaaggagaccgtcagcgaaggcgcggtgtac
cgctgcgtcggccgcctggcctgtggggcgcagctcaagcaggcgatcattcattttgtt
tcgcggcgtgccatggatatcgatggcctgggcgacaagaccatcgagcaactggtggat
gaaaaactcatcggctcgcccgccgacctctacaaactcaagtacgagcagatcatcgac
ctggaaggctttgccgacatctccagcaagaagctgatcacggccattgaaaacagcaag
acgccgaccctggcgcgcttcatctatgccctgggcattcccgacgtgggcgaggagacc
gccaaggtactggcgcgctccctggcgtccctggagcgggtgcagaaagccttgccggag
gtgttgacgtacctgccggatgtcggcctggaggtggcgcatgaaatccatagtttcttt
gaagacagccacaaccaggacgtgatcggcgcgctgctgtcaccgcaggagtgcggcctg
caattgcaggatcagggcgagctgagcgctgaattcgcggccagcacgaccttgggcggt
ctgctcgacaaacttcacgtgccgagcgtcggcccgggggcggcgcagaaactggcggac
aaattcggcacccttgagggcgtgatcaaggccgactggctggatatgcgccaggcactg
cccgagaagcaagccaaggcggtgcgcgatttcttcgataacgcaggcaacgccacgcat
gccctggccattgagcagcagctcaaggacttcggcatgcactggcagagcgagaagaag
gtcatcgaaggcttgccggaagccggtcatacctgggtgctgacgggctccctggagctg
atgagccgcgatgtggccaaggacaagctcgaaagccttggcgccaaggttgcagggtcc
gtttcggcgaaaacccactgcgtggtcgcggggccaggcgccggttcgaaattggccaaa
gccagtgaattgggcttgaaagtgctggatgaggcagccttcgttgccttcctggccaag
cacaacatcccagcctga
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