Pelagovum pacificum: I8N54_08765
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Entry
I8N54_08765 CDS
T06971
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppaf
Pelagovum pacificum
Pathway
ppaf03030
DNA replication
ppaf03410
Base excision repair
ppaf03420
Nucleotide excision repair
ppaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I8N54_08765 (ligA)
03410 Base excision repair
I8N54_08765 (ligA)
03420 Nucleotide excision repair
I8N54_08765 (ligA)
03430 Mismatch repair
I8N54_08765 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppaf03032
]
I8N54_08765 (ligA)
03400 DNA repair and recombination proteins [BR:
ppaf03400
]
I8N54_08765 (ligA)
Enzymes [BR:
ppaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I8N54_08765 (ligA)
DNA replication proteins [BR:
ppaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I8N54_08765 (ligA)
DNA repair and recombination proteins [BR:
ppaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I8N54_08765 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I8N54_08765 (ligA)
MMR (mismatch excision repair)
DNA ligase
I8N54_08765 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I8N54_08765 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QQA44642
LinkDB
All DBs
Position
1775677..1777944
Genome browser
AA seq
755 aa
AA seq
DB search
MEATVAAARDKDIEKLTSKEAEAELERLAGALAEANDAYHAADNPTLSDADYDALKRRNA
AIEDRFPELMRPDSPSDQVGAAPASGFEKVTHSVRMLSLSNAFDADDIRDFDDSIRRYLN
LSASDPLQYTAEPKIDGLSLSLRYENGELVRAATRGDGSVGENVTRNALTIDDIPNRLAD
APDILEVRGEVYMSHEDFTALNTRQQEANGKTFANPRNAAAGSLRQLDPEVTKQRPLRFF
AYAWGEVSAPLSDTQMGAIERLQALGFQTNPLTRICNGPDEMLAHYAEIEAQRATLGYDI
DGVVYKVDDLGLQGRLGFRSTTPRWAIAHKFPAELAWTTLERIEIQVGRTGALSPVARLT
PVTVGGVVVSNATLHNEDYIAGLDSRGAPIRDGKDIREGDWVQVYRAGDVIPKVADVDLS
RRPKDAQPYVFPDTCPECGSEAIREEGDAVRRCTGGLVCPAQAVEKLKHFVSRAAFDIEG
LGAKQVEAFHQDGWIAEPADIFTLKDRYGPGQLTQLKNREGWGEKSAENLFDAIDERRRI
PLAKMIFALGIRHVGEVAGSDLARHFGAWEPFARTVDLAAPAAERASAAEAAVLAERATA
AEEGRRARITETREKIWTDPPLDPDARAAWEEIVGIEGLGTTVAQSLVTTFAQESERKSI
DRLVAHLRIEEAEAQATDSPVAGKTVVFTGSLEKMTRAEAKARAESLGAKVSGSVSAKTD
LLVAGPGAGSKAKKAAELGVETIDEDAWLALIGAG
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgacggtggccgcggcccgggacaaggacatcgaaaagctcacctcgaaagag
gcggaagccgagctcgagcgcctcgccggcgccctggccgaggcgaacgacgcctatcac
gccgccgacaatccgaccttgtccgacgccgactacgatgcgctgaagcggcgcaatgcc
gcgatcgaagatcgctttcccgagctcatgcgcccggacagcccaagcgaccaggtcggc
gcagccccggcctccggcttcgagaaggtcacgcattcggtgcgtatgctgtccctgtcg
aacgccttcgatgcggacgacattcgcgacttcgacgatagtatccggcgctacctgaac
ctgtccgcgtccgatccgctgcaatacaccgccgagcccaagatcgacggcctgtcgctg
tcgctgcggtacgagaacggcgaactcgtgcgcgccgcgacccgtggtgacgggtcggtc
ggtgagaacgtgacccgcaacgccctgaccatcgacgacattcccaaccgtctggcggat
gcccccgacattctggaggtgcgcggcgaagtctacatgagccacgaggatttcacggcc
ctcaacacgcgccagcaagaggcgaacggcaagactttcgccaacccgcgaaatgccgcc
gccggatcgctccgccagctcgatcccgaggtgacgaagcagcgcccgctgcgcttcttc
gcctacgcctggggggaggtctctgccccgctctccgacacgcagatgggcgcgatcgaa
cggctgcaagcccttggcttccagaccaatccgctgacgcgcatctgtaacggcccggac
gagatgctcgcccactatgccgagatcgaggcgcagcgcgccacgctcggctacgatatc
gacggcgtcgtctacaaggtggacgaccttggcctgcaggggcgccttggctttcggtcg
accacgccccgctgggccattgcgcacaagtttccggctgaactcgcctggaccacgctc
gagcggatcgaaatccaggtcggtcgcaccggcgcgctcagccccgtggcacggctgacg
ccggtcacggtcggcggcgtcgtcgtgtccaacgcgacgctacacaacgaggattacatc
gccgggctggacagtcgcggcgccccgatccgggacggcaaggacattcgggaaggcgat
tgggtgcaggtctaccgcgccggcgatgtcattccgaaggtggcggacgtcgacctgtca
cgccgccccaaggacgcacagccatatgttttcccggacacctgtccagaatgtggatcc
gaagcgatccgcgaggaaggcgatgcggtgcgccggtgcactggtggcctcgtctgtccc
gcgcaggcggttgagaagctgaagcacttcgtctcgcgcgcggccttcgacatcgaaggg
ctgggcgcgaaacaggtcgaagcgttccatcaggacggctggatcgcggagcctgccgac
atcttcacactgaaggaccgctacgggccgggccagctgacgcagctgaagaaccgcgag
gggtggggcgagaaatcggcggagaacctgttcgacgcgatcgacgagcggcggcgtatt
ccgctggccaagatgatcttcgcgctcggcatccgccatgtcggggaagtcgccggcagc
gacctcgcccggcatttcggcgcctgggagcctttcgcgcgaaccgtcgacctcgcggcc
ccggccgccgaacgggcgagtgccgccgaggcagcagtgcttgccgaacgcgcgaccgcg
gccgaggagggccgccgtgcccggatcacggagacgcgcgagaagatctggaccgatccg
cccctcgatccggacgcgcgtgccgcctgggaggagatcgtcgggatcgaggggctcggc
accaccgtggcgcagagcctcgtgaccaccttcgcgcaggagtccgagcgcaagtcgatc
gaccgccttgtcgcgcatctccggatcgaggaggccgaagcgcaggcgaccgacagcccc
gtcgcgggcaagaccgtcgtcttcaccggctcgctcgagaagatgacgagggccgaggcg
aaagctcgcgctgaatcgctcggcgccaaggtttcgggtagcgtttcggccaagacggac
ctgctcgtcgcgggcccgggcgcaggatcgaaggcgaagaaggccgccgagctgggggta
gaaacgatcgacgaggacgcgtggctcgcgctgatcggcgcgggatga
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