Paraburkholderia pallida: E1956_11455
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Entry
E1956_11455 CDS
T09864
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppai
Paraburkholderia pallida
Pathway
ppai03030
DNA replication
ppai03410
Base excision repair
ppai03420
Nucleotide excision repair
ppai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E1956_11455 (ligA)
03410 Base excision repair
E1956_11455 (ligA)
03420 Nucleotide excision repair
E1956_11455 (ligA)
03430 Mismatch repair
E1956_11455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppai03032
]
E1956_11455 (ligA)
03400 DNA repair and recombination proteins [BR:
ppai03400
]
E1956_11455 (ligA)
Enzymes [BR:
ppai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E1956_11455 (ligA)
DNA replication proteins [BR:
ppai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E1956_11455 (ligA)
DNA repair and recombination proteins [BR:
ppai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E1956_11455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E1956_11455 (ligA)
MMR (mismatch excision repair)
DNA ligase
E1956_11455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E1956_11455 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QBQ97732
LinkDB
All DBs
Position
1:complement(2530744..2532804)
Genome browser
AA seq
686 aa
AA seq
DB search
MVRSPARPPEESTAAQRAAWLRAELERANHAYYVLDQPELPDAEYDKLFRELQGIEAGNP
ELVSPDSPTQRVGGEAAAGFEPVLHDVPMLSLNNGFADEDIVAFDKRVADALDKPEGDPV
EYACELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSLPLRLKGNHVPKVL
DVRGEVLMFRRDFDRMNERQREAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIG
VLEGEPMPATHSELLDWYAQMGLPVNSERAVVKGAQGLLDFFRAVGEKRDALPYDIDGVV
YKVNRRTEQDTLGFVSRAPRFALAHKFPAQEALTKVVAIDVQVGRTGAITPVARLEPVFV
GGATVTNATLHNEDEVRRKDIRIGDTVVVRRAGDVIPEVVSALLERRPADAREFVMPTEC
PVCGSSIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVDQNLV
RTPADLFNLGFSTLAELERMADKSAQNLLDSLEKAKSTTLARFIYALGIRHVGESTAKDL
AKHFGSLDPIMDASIEQLLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVRWADGP
PAPKAPVGVLAGKTVVLTGTLPTLKREEAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSK
LAKAEELGVPVLDEEGLHKLLEGHTT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggtccgttctcccgcccgtcctcccgaagaatccactgcggcgcagcgcgcggcgtgg
ttgcgcgccgaactcgagcgcgccaatcacgcgtactacgtgctcgaccagccggagctg
cccgacgcggaatacgacaagctgttccgagagctgcaaggcatcgaggccgggaacccg
gagctcgtttcgcccgattcgcccactcagcgcgtgggcggcgaggcggcggccggtttc
gagccggtgttgcacgacgtgccgatgctctcgctcaacaacggcttcgcggacgaagac
attgtcgcgttcgacaagcgcgtggccgacgcgctcgacaagcccgaaggcgacccggtc
gagtacgcatgcgagctgaagttcgatggcctcgccatctcgctgcgctatgtggacggc
gtgttcgtgcaggcctccacgcgtggcgacggcacgaccggcgagaacgtcacggaaaac
gtgcgcaccatccgctcgctgccgctgcgcctgaaaggcaaccacgtgccgaaagtgctc
gacgtgcgtggtgaagtgctgatgttccgccgcgacttcgaccgcatgaacgagcgtcag
cgcgaagcgggccacaaggagtttgcgaacccgcgcaatgcggcggcaggcagcctgcgc
cagctcgatccgaagatcaccgcgcagcggcccttgtcgttcttcgcttacgggatcggc
gtgctcgaaggcgagcccatgcccgccacgcacagcgagctgctcgactggtacgcgcaa
atgggcttgccggtgaacagcgagcgcgcggtcgtgaagggcgcacaggggctactggac
ttcttccgcgccgtgggtgagaagcgcgatgcgctgccttacgacatcgacggcgtggtc
tacaaggtcaaccgccgcacggaacaggacacgctcggcttcgtctcacgcgcgccgcgc
ttcgcgctcgcccacaaatttccggcgcaggaagcgcttacgaaggtcgtcgccatcgac
gtgcaggtgggccgcaccggcgccatcacgccggtcgcgcggctcgagcctgtgttcgtg
ggcggcgcgaccgtcacgaacgccacgctgcacaacgaagacgaagtgcgccgcaaggac
atccgcatcggcgacacggtcgtggtgcgccgcgccggcgacgtgatccccgaggtcgtg
agcgcgctcctcgagcgccgccccgcggatgcccgcgagttcgtgatgcccaccgagtgt
ccggtgtgcggctcgagcatcgagcgcctgcccgacgaagcgatcgcccgttgcacgggc
ggcctcttctgcccggcgcagcgcaagcaggcgctgtggcacttcgcccagcgccgcgcg
ctcgacatcgacggtctgggggaaaagatcatcgaccagctcgtcgaccagaatctggtg
cgcacgccggccgacctgttcaatctcggattctccacgctggcggagctcgagcgcatg
gcggacaagtcggcgcagaatctgctcgattcgctcgaaaaggccaaatccaccacgctg
gcgcgtttcatctacgcgctcggcatccgccacgtgggcgaatccacggcgaaggatctg
gcgaagcatttcggctcgctcgaccccatcatggacgcgtccatcgaacaactgctcgaa
gtgaacgatgtcggcccgatcgtggccgagtcgattcatcagttctttgcggaagaacat
aaccgcaccgttatcgagcaactgcgcgcaccgggcaaggtcagatgggcggacggtccg
cccgcgccgaaggcgccggtgggcgtgctggcgggcaagacggtggtgctcaccggcacg
ctgcccacgctcaagcgcgaagaggcgaaggagatgctggaagcggccggcgcgaaggtg
gctggctcggtgtcgaagaagaccgactacgtggtggcgggcgccgacgcgggcagcaag
ctcgcgaaagccgaggaactcggcgtgccggtgctcgacgaagaagggttgcacaagctc
ctggaggggcacacgacatga
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