Polynucleobacter paludilacus: AOC06_02970
Help
Entry
AOC06_02970 CDS
T08333
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppal
Polynucleobacter paludilacus
Pathway
ppal03030
DNA replication
ppal03410
Base excision repair
ppal03420
Nucleotide excision repair
ppal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOC06_02970 (ligA)
03410 Base excision repair
AOC06_02970 (ligA)
03420 Nucleotide excision repair
AOC06_02970 (ligA)
03430 Mismatch repair
AOC06_02970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppal03032
]
AOC06_02970 (ligA)
03400 DNA repair and recombination proteins [BR:
ppal03400
]
AOC06_02970 (ligA)
Enzymes [BR:
ppal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AOC06_02970 (ligA)
DNA replication proteins [BR:
ppal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AOC06_02970 (ligA)
DNA repair and recombination proteins [BR:
ppal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AOC06_02970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOC06_02970 (ligA)
MMR (mismatch excision repair)
DNA ligase
AOC06_02970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOC06_02970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
FrhB_FdhB_C
Motif
Other DBs
NCBI-ProteinID:
QWD87875
LinkDB
All DBs
Position
546652..548649
Genome browser
AA seq
665 aa
AA seq
DB search
MNLADRYAFLQKELARLEHAYYVLDAPLLPDSEYDRLYRELLEIEAAHPEWITSESLSQR
VGGDALKEFDTVEHVVPMLSLNNAFEDAELIAFDRRCREGLDVKQVNYAGELKFDGLAIS
LRYENGSLVRAATRGDGASGEDVTANIKTVRAIPLRLLGKNIPAVLEVRGEVFMYLDDFQ
KMNQQAATQGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQGWLPATHEE
LLNRYADLGLPVCAERKVLTSVEEMLSFYHAIEAKRDTLPYDIDGIVYKVNSFAEQNTLG
FVSRAPRFALAHKFPAQEALTTVLGIDVQVGRTGAITPVARLAPVVVGGVTVTNATLHNE
DEVRRKDVRIGDTVTVRRAGDVIPEVVSVIQERRPTDATQFVMPTRCPVCDSHIERLADE
AVARCSGGLFCGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDQNLVRTPADLYRLGFSA
LANLERMGEKSADNLIQAIHQSRHTTLARFIFALGIRHVGETTAKDLANHYQSMHALMDA
SLEDLLTVKDVGPVVADSITSFMAEAHNREVIEQLLASGMQLSVEKKVISAAVVGKTFVL
TGTFPSLSRDQAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLSKAEELGITVIDEQAM
LELLG
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgcggatcgttacgcctttttgcaaaaagagcttgctcgtctagagcacgcc
tactatgttcttgatgccccgctactacccgatagtgaatacgatcgcctctatcgagaa
ttattggagatagaggcagcccatcctgagtggatcacttcagagtcactgtcccagcgg
gttggtggggatgccctcaaagaatttgatacagtagagcatgttgtgccaatgctttct
ctcaataatgcctttgaggatgccgaattaattgcgtttgatcgccgctgtagagaaggt
ttggacgttaaacaggtcaactatgcgggtgagttaaagtttgatggcctggcgatctct
ctgcgttatgaaaatggctccttagtccgagcagcaactcgaggcgatggtgcaagcgga
gaagatgttacagcgaatatcaaaacagtccgcgccattcctctgcggctactgggtaaa
aatattccagctgttttggaggtccgtggcgaagttttcatgtatctggatgatttccaa
aaaatgaatcaacaggccgccactcagggtgaaaaagaatttgctaatccgcgtaatgct
gctgccggtagcttaaggcagttggattcgaagatcaccgcaaaacgtccactatctttc
ttcgcttatggcctaggcgccttagagccccaaggatggcttcccgccactcatgaagag
ttactcaatcgctatgcagatttaggtttgccggtatgtgcagagcgaaaagtattgacc
tcggtagaggagatgctgagtttctatcatgcgatagaagccaagcgcgatactttgccc
tacgatattgatggcatcgtttacaaggtcaattcctttgctgaacaaaataccttaggt
tttgtatctagagctccccgttttgctctagcgcataaatttcctgctcaagaggctttg
actaccgtcttaggtattgatgttcaggtgggccgcactggcgccattacacccgttgct
cgattggctccagtagtagtggggggtgtcacagtcaccaatgcaaccttgcacaatgaa
gatgaagttaggcgcaaggacgtacgcatcggcgataccgtcaccgtacgtcgtgctggt
gatgtgattccagaggtagtctcagtcattcaggagcggcgtcctacagatgccacgcag
ttcgtcatgcctacccgttgtccagtatgtgattctcatattgagcgcttagcagatgaa
gcagtagcacgttgtagcgggggtttattttgtggagcgcagcgtaaacaggctctcatc
cattttgcccatagaagggcgctcgatattgaaggtctcggtgagaagattgttgatcag
ttggttgatcagaacttagtgagaactcctgcagacctttatcgcttaggtttttctgct
ctagccaatttagagcggatgggtgagaagtccgctgacaatctcattcaagcgattcat
caatcacgccatacgaccttggccagatttatctttgctttgggcattcgccatgtaggt
gagacgactgcaaaagaccttgctaatcactaccagtcgatgcacgctctgatggatgct
agtttggaagatctgctgacggtgaaagatgttgggcctgtagtagcagattccattaca
agttttatggcagaagcccataatcgagaagtaatcgagcagcttctagcatcaggcatg
caactctccgttgagaagaaggtgatcagcgctgcagtagtaggaaaaacgtttgtgctt
actggaacttttccaagcctgagtcgcgatcaagctaaagaccttttggagaaggcgggc
gcgaaggtcgctggatcggtctccaaaaaaacagattatgttgtcgcaggtacagacgct
ggtagcaagctaagcaaagcagaagagttgggcattacagtgattgacgagcaggccatg
ctcgaattgctgggttaa
DBGET
integrated database retrieval system
