Pteronotus mesoamericanus (Parnell's mustached bat): 129078617
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Entry
129078617 CDS
T09558
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ppam
Pteronotus mesoamericanus (Parnell's mustached bat)
Brite
KEGG Orthology (KO) [BR:
ppam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppam03036
]
129078617 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ppam03400
]
129078617 (SMCHD1)
Chromosome and associated proteins [BR:
ppam03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
129078617 (SMCHD1)
DNA repair and recombination proteins [BR:
ppam03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
129078617 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
129078617
NCBI-ProteinID:
XP_054439389
LinkDB
All DBs
Position
Unknown
AA seq
2001 aa
AA seq
DB search
MAAAGGGGPSVGTGEGGGDDGCRKVYLFDRREKESELGDRVVQVGEHSDYAEFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDETVKDGITLYLLQSVDQLLLTATKERIEFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSCNIGIRRIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKESIYSGYIRNRKPSDSVHITNDDE
RFLHCLISEEKEKDSFTAVVITGVQSEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEKH
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTATESFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPYT
SVEGFDWCTPPKKKGLAPIECYNRISGALFTNDRFQVSTNKLTFMDLELKLKDKNTLFTR
ILNGQEQRMKIDREFALWLKECHEKYDKQIKFTLFKGIITRSDLPSKKQGPWATYSAIEW
DGKIYKAGQLVKTVKTLPLFYGSIEKFFLYGDHDGEVYATGGEVQIAMEPRALYDETKTV
PIAKLDRTVAEKTVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEILN
KKGEAMQKLPGPSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQK
LGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVPFNIP
LEFQDEFGHTTQLINDIQPVLEASGLSLQYEEITKGPNCVIRGVTAKGLVNSCQGKNFNL
KVILPGLKEDSQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITVQP
KLIVHCKFSGAPNLPLYTVDCSSSGTSILSGSAIQVQNIKKDQTLKAKIEIPSCKDVASV
EKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIHVT
SALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPL
PDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSSLGIAGNGLDNS
QLKTTFQENTQSISVRGIKFTPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLFVDWPE
VKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKINVIKANNLKLIPSNQQHKTDERGR
ANLGVFSVHAPRGEHTIQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLAG
GTFTDFMITVISEDDSIIKNINPARISMKMWKLSNNGNRPPANAEIFSCNKIKDNDKEDG
CFYFRDKAIPNKMGIYCIQFGFMMDKANTLNSEQIIIDVQPNQPVKLVPKIQPATPAVSN
DHSVANRTLVKDLHLIITDDFNNQTGIDLVGTVIATIKGSNEEDTETPLFVGKVRTLEFP
FVKGSAEITSLVLAENSPGKDSTEYFIIFEPQLPALSRTLESYILPFMFSDDVKKQQQLL
AFAKQKDKLSRSIETYRDVFETSRQLIDEMKCQVEGAKLKEAQLRNELKTHNIDIPTTQQ
VPHIEALLKRKILEQEELKKKPRRSCTLPNYTKSSGNVLGKIAHLAQIEDDRAAMVISWH
LASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYRKTLPDWKRPLPHYRNGKLYFKPI
GDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLVLGEQIDLLQQYRNALDKLNSLTK
DLNSQLEYLQSPEMKKKKQELDEQEKNLKLIEQQLAITLTPKCNDSLRHPTKVEMTDCPI
PPKRMRREVIRQNRTITKTNV
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctctgtggggactggagagggtggtggagacgac
ggctgcaggaaggtgtacttgtttgaccggcgcgagaaggagtcggagctcggcgaccgg
gtggtgcaggtcggggagcactcggactacgcggagttccgcgcctccgtgtgtcagaca
cttggcatttcacctgaggaaaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgaaactgtaaaagatggaattactctataccttctacagtcagtc
gatcagttactactaacagctaccaaagaacgaattgaattcctgcctcactatgacact
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gctcttgcagaattaattgacaattcattgtctgctacttcttgtaacattgggattaga
aggatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacttctaaacagcttaacaactgggctgtgtataggttgtcc
aaatttacaagacaaggtgactttgaaagtgatcattcaggatatgttcgaccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gaacttgtgctttctaaagaagattttgagaagaaagagaaaaataaagagtcaatatat
agtggatatattagaaacagaaagccatctgattctgttcatattacaaatgatgatgaa
agatttctacattgtcttatatcagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggagtacaatcagaacacatacagtacttgaaaaattactttcatctttggaca
agacagttagcgcatatttatcattactatattcatggccccaaaggaaatgaaaaacat
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacttaagggaaatacaagatgacatgcagacgttatat
ataaacacagcaactgagagttttgaattcaaagctcacgttgaaggagatggtgtagtg
gaagggattatccgatatcaccctttcttatatgatagagaaacttaccctgatgatcca
tgctttccaaaattaaaagatgaagatgatgatgatgattgttttatacttgagaaagct
gcaagagggaaaaggcctatttttgaatgtttttggaatggacggctaataccatataca
tctgttgaaggctttgactggtgtactcctcctaagaagaaagggcttgcaccaattgag
tgctacaatagaatatctggtgcattattcactaatgacagattccaggtcagcacaaat
aaactgacttttatggatcttgagctaaaattgaaagataagaacaccctttttacaagg
attttaaatggacaggagcagcgcatgaaaattgacagagaatttgctttatggctcaag
gaatgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaatcattacg
cgttctgatcttccttctaaaaagcagggcccctgggccacatactcggcaatagaatgg
gatggaaaaatatacaaagcaggacagctggtcaagacagtgaagacacttcctctcttt
tatggaagcatagaaaaattttttctttatggtgatcatgatggagaggtatatgctaca
ggaggagaggttcaaattgcaatggaacctcgagcactgtatgatgaaacaaaaacggtg
ccaattgcaaagctggataggacagttgctgagaaaactgtaaaaaaatacgtagaagat
gaaatggcaaggctccctgacagattgtcagtaacttggcctgaaggagatgaattattg
ccgaatgagattaggcctgctggaacccccattggtgcattaaggattgaaatactgaat
aaaaaaggggaagcaatgcagaagcttccaggaccaagtcatggagggtcaaagaaactc
ctggttgagctcaaagttatattacattcttcaagtggaaataaagaaatcatttcacat
attagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaaaag
ttggggaattatacattgaaattacaagttgtattgaatgaaagtaatgcagacacttat
gctggaagaccgctaccatctaaagcaattaagttttctgttaaagagggtaagccagag
aaattttcatttggtcttctggatcttccttttcgtgttggagttccattcaatatccct
ctggagtttcaggatgaatttggtcatactactcaactaataaatgatattcagccagtt
cttgaagcaagtggtttatctttacaatatgaagaaataaccaagggaccaaattgtgta
atacgaggtgttacagctaagggccttgtaaactcttgtcaaggcaagaattttaatctg
aaggttattcttccgggtttaaaagaagactcacagattttgaaaattagattactgcca
ggtccacctcgtcgattgaaagtgaaacctgattctgaaattttagttatagaaaatgga
acagctttcccatttcaggtagaagttttggatgaatcagacaatataacagtacaacca
aaattgattgttcattgtaagttttcaggtgctcctaaccttccactctacactgtggat
tgcagtagttctggaaccagtattttatcaggatctgccattcaagttcagaatattaaa
aaagaccagacgcttaaagctaaaattgaaatacctagttgtaaagatgtggcatctgtg
gagaaaactattaagttgcttcccagtagccatgttgcaagattacagatattcagtgtg
gaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggcgat
gttatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccatgtaact
tcagctttagcagagaaaattaaagttaattggactcctgagattaacaaagaacactta
ctacaaggactgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgctattgc
caggtttcatttcaagatgatcatgtgtctttggaaagtgcatttacagtaagacccctc
cctgatgaacctaaacatctaaagtgtgaattaaaaggaggaaaaacagtacagatgggc
caagagcttcaaggggaaatagttataatagttacagatcagtacggaaatcagattcaa
gcattttcaccaagttctttatcttccttgggaatcgctggtaatggacttgataactca
cagttgaaaactacctttcaggaaaatacgcagagtattagtgtgagaggcatcaaattt
accccaggtcctcctggaaataaggatctttgttttacttggcgtgaattttctgacttt
attcgagtacagctaatttctggaccaccagctaaacttctctttgtagactggccagaa
gtaaaggaatctattccagtgattaatggaagagaattacagaatcctctcattgttcaa
ctttgtgatcagtgggataatccagcacctgtaccacaggttaaaataaatgtcataaaa
gctaacaatttaaagctcattccttcaaaccaacagcataaaacagatgaaaggggcagg
gctaatttgggagtgttcagtgttcatgcccctagaggagaacatactatacaagtgaaa
gccatctataacaagaataccatagaagggcctataattaagttaatgattcttccagac
cctgaaaaacctattcgtctcaatgttaaatatgacaaagatgcttccttcttggcaggg
ggtactttcactgattttatgattactgttatttctgaagatgatagtatcattaaaaat
attaatccagcacgtatttccatgaaaatgtggaagctctctaacaatgggaaccgacca
ccagcaaatgcagaaatatttagttgtaataaaataaaagataatgataaggaagatggc
tgcttctacttcagggataaagcaattcctaataaaatgggaatatattgtatccagttt
ggttttatgatggataaagctaatactcttaacagtgaacagattataattgatgttcaa
cctaatcaacctgtgaagttagtacctaaaattcagccagctacaccagctgtttcaaac
gatcactcggttgccaataggacccttgtcaaagacctacatcttattatcacggatgac
ttcaacaatcagactggaattgatttggttggcactgtaatagctaccatcaaaggttct
aatgaagaagataccgagacaccactctttgttgggaaagttagaacacttgagtttccc
tttgtgaaaggttcagctgaaatcacgagtctcgtgctggcagaaaatagtcctggaaag
gatagtactgaatattttattatatttgagcctcagctaccagctttatcaagaacatta
gaatcatacatcctaccatttatgttttctgatgatgttaagaagcagcagcaactgcta
gcatttgcgaaacaaaaggataaattatctcgatctattgaaacatatagagatgttttt
gaaaccagcagacagcttattgatgaaatgaagtgccaagttgaaggagcgaaattaaaa
gaggcccagttgagaaatgaactaaaaacacataatattgacattcctacaacacaacag
gtgccacacattgaagcacttttgaaaagaaagatattagaacaggaagaactaaagaaa
aaacctagaagatcatgtactcttccaaactatactaaaagcagtggaaatgttttggga
aagattgcacacctggcacaaattgaagatgacagagcagcaatggttatttcttggcat
ctggcaagtgatatggattgtgttgtcaccttgaccactgatgctgcgcgtcgtatctat
gatgaaacccaaggccgtcagcaggtgttgccccttgattctatttataggaagactctt
ccagactggaaaagacctctgcctcattaccgaaatggaaaattatattttaaacccatt
ggagatccagtctttgcccgagatttgttaacatttccagataatatagaacattgtgaa
acagtatttggtatgctattaggagacaccattattttggataatttggatgctgccaat
cattacagaaaagaggttgttaaaattacacactgtcctacactgctcaccagagatgga
gatcgcattcgaagtaatggaaagtttgggggccttcagaataaagctcctccaatggac
aaacttcggggaatggtatttggagctccggtaccaaaacagtgcctggtcttaggggaa
caaatagatcttcttcaacagtatcgtaatgctctggacaagttgaacagtctgactaag
gaccttaacagtcaattagagtaccttcagtctcctgaaatgaagaagaaaaaacaagaa
cttgatgaacaagagaaaaatctgaaactaatagagcaacaactagctataactctcaca
cctaagtgtaacgattcattacgtcatccaacaaaggttgaaatgacggattgtccaatt
cctcctaaaagaatgagaagagaagttataagacaaaataggactataaccaaaacaaat
gtgtga
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integrated database retrieval system
