Paracoccus pantotrophus: ESD82_03940
Help
Entry
ESD82_03940 CDS
T06495
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppan
Paracoccus pantotrophus
Pathway
ppan03030
DNA replication
ppan03410
Base excision repair
ppan03420
Nucleotide excision repair
ppan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ESD82_03940 (ligA)
03410 Base excision repair
ESD82_03940 (ligA)
03420 Nucleotide excision repair
ESD82_03940 (ligA)
03430 Mismatch repair
ESD82_03940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppan03032
]
ESD82_03940 (ligA)
03400 DNA repair and recombination proteins [BR:
ppan03400
]
ESD82_03940 (ligA)
Enzymes [BR:
ppan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ESD82_03940 (ligA)
DNA replication proteins [BR:
ppan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ESD82_03940 (ligA)
DNA repair and recombination proteins [BR:
ppan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ESD82_03940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ESD82_03940 (ligA)
MMR (mismatch excision repair)
DNA ligase
ESD82_03940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ESD82_03940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
PTCB-BRCT
5_3_exonuc
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
QFG35352
LinkDB
All DBs
Position
2:814942..817239
Genome browser
AA seq
765 aa
AA seq
DB search
MAGDDEDRTAPAGEPAVPAAALPPVSSLDAEAAAAEHARLSDEVARANLAYYQEDAPFIS
DAEYDDRKRRLEEIEARFPQLAHPGSPTEQVGAAPDTRFAKIPHRLPMLSLENGFTQGDV
ESFVQRVRSFLNLASGAPLEITAEPKIDGLSLSLRYEGGRLVQAATRGDGAVGENVTANA
RTIADIPGQLAGDGWPEILEIRGEVYMSHADFEKLNQSDSGRVFANPRNAAAGSLRQLDP
NVTAARPLRFFAYAWGEVSAPFADTQMEAVRRMRDFGFQTNPLTRICGSVQDMLAAWTEI
EQMRATLGYDIDGVVYKVNDLGYQARLGMRSTTPRWALAHKFPAERAWTRLEAIDIQVGR
TGALSPVARLHPVTVGGVVVSNATLHNEDYIAGRGADGSEIRGGKDIRIGDWVEVYRAGD
VIPKVADVDLAKRPPESVPYAFPETCPECGSPAIREEGDSVRRCTGGLICPAQAVEKLRH
FVSRAAFDIEGLGAKLVEELFRDGWIAEPADIFTLQDRYGPGQPKQLKNREGWGEKSAAS
LFQAIEKRREIPFARLLFALGIRHVGEVAAQDLARHYGSWEALEAALDTARPAAVAHRLA
EDAAQAERAAAQAEGRRARPSEARAAALAQVDLPPEASAAWAGLIAADGIGPVLAMSLSD
AFANARERAAIDRLLGFLTVLPPEKRAADSAITGKTLVFTGTLEKMTRAEAKARAEALGA
HVAGSVSAKTDLLIAGPGAGSKAKKAAELGIKVIDEDEWLAIAQG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggccggagatgacgaggatcggacggctcccgcgggggagccggcagtgccggcggcg
gccttgccgcccgtttcgagcctggacgccgaggccgccgcggccgagcatgcccggctg
agcgacgaggtggcgcgggcgaacctggcctattaccaggaagacgcgcccttcatcagc
gatgccgaatacgacgaccgcaagcgtcggctcgaggagatcgaggcgcgtttcccccag
cttgcccatcccggcagcccgaccgagcaggtcggcgccgcgcccgatacgcgctttgcc
aagatcccgcatcgcctgccgatgctgtcgctggaaaatggcttcacccagggcgatgtc
gaatccttcgtgcagcgggtgcgctctttcctcaacctggcttcgggcgcgccgctggag
atcaccgccgagcccaagatcgacgggctgtcgctgtcgctgcgctacgaaggcgggcgg
ctggtccaggccgcgacccgcggcgacggtgcggtgggcgagaacgtgaccgccaatgcc
cgcaccattgcagacatccccggccagcttgccggcgacggctggcccgaaattctggag
atccgcggcgaggtctacatgtcgcatgcggatttcgagaagctgaaccagtccgacagc
ggccgggtctttgccaacccgcgcaatgcggcggcgggctcgctgcgccagctcgatccc
aatgtgacggcggcccggccgctgcgcttctttgcctatgcctggggcgaggtcagcgcg
ccttttgccgacacgcagatggaagcggtgcggcggatgcgggatttcggcttccagacc
aatccgctgacccggatctgcggctcggtgcaggacatgctggccgcctggaccgagatc
gaacagatgcgcgcgaccttgggctatgacatcgacggcgtggtgtataaggtcaacgat
ctgggctatcaggcacggctcggcatgcgctcgaccacgccgcgatgggccctggcgcac
aagttcccggccgagcgcgcctggacccggctggaagccatcgacatccaggtcggccgc
accggcgcgctgagcccggtggcgcggctgcatccggtgacggtgggcggcgtcgtcgtc
tcgaacgccaccctgcataacgaggattacatcgccggccgcggcgccgacggcagcgag
atccgcggcggcaaggacatccgcatcggcgactgggttgaggtctatcgcgccggcgac
gtgatccccaaggtcgcggacgtggacctggccaagcgcccgcccgagtccgtgccctac
gccttccccgagacctgcccggaatgcggctcgcccgccataagggaagagggcgattcg
gtccggcgctgcaccggcgggctgatctgcccggcccaggcggtcgagaagctgcgccat
ttcgtctcgcgcgccgcctttgacatcgaggggctgggcgccaagctggtcgaggagctg
ttccgcgatggctggatcgccgaaccggccgacatcttcaccttgcaggaccgctacggc
cccggccagcccaagcagttgaaaaaccgcgagggctggggcgagaaaagcgccgccagc
ctgttccaggccatcgagaaacgccgcgagatcccgttcgcgcggctgcttttcgctctt
ggcatccgtcatgtcggtgaggtcgcggcgcaggatctcgcccgccattacggcagctgg
gaggcgctggaggcggcgctcgacaccgcgcgcccggcggctgtggcgcatcgcctggcc
gaggatgcggctcaggccgagcgcgcggccgcgcaggccgagggccgccgcgcccggccg
tccgaggcgcgcgccgccgcgctggcgcaggtcgatctgccgcccgaggccagtgcggcc
tgggccgggctgatcgccgccgacggcatcggcccggtgctggccatgtcgctgtcggac
gccttcgccaatgcgcgcgagcgggcggcgatcgaccggctgctcggctttctgaccgtg
ctgccgcccgagaagcgtgccgccgacagcgccatcaccggcaagaccctggtctttacc
ggcacgctggaaaagatgacgcgggccgaggccaaggcgcgggccgaggcgcttggcgcc
catgtcgcgggctcggtctcggccaagaccgacctgctgatcgccggccccggcgccggg
tcgaaggcgaagaaggccgccgaactgggcatcaaggtcatcgacgaggacgaatggctg
gcgatcgcccaggggtga
DBGET
integrated database retrieval system
