Pectobacterium parmentieri RNS 08-42-1A: A8F97_00820
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Entry
A8F97_00820 CDS
T04513
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Pathway
ppar03030
DNA replication
ppar03410
Base excision repair
ppar03420
Nucleotide excision repair
ppar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A8F97_00820 (ligA)
03410 Base excision repair
A8F97_00820 (ligA)
03420 Nucleotide excision repair
A8F97_00820 (ligA)
03430 Mismatch repair
A8F97_00820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppar03032
]
A8F97_00820 (ligA)
03400 DNA repair and recombination proteins [BR:
ppar03400
]
A8F97_00820 (ligA)
Enzymes [BR:
ppar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A8F97_00820 (ligA)
DNA replication proteins [BR:
ppar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A8F97_00820 (ligA)
DNA repair and recombination proteins [BR:
ppar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A8F97_00820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A8F97_00820 (ligA)
MMR (mismatch excision repair)
DNA ligase
A8F97_00820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A8F97_00820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
HeH
Motif
Other DBs
NCBI-ProteinID:
AOR57460
UniProt:
A0A8B3FIW6
LinkDB
All DBs
Position
188730..190754
Genome browser
AA seq
674 aa
AA seq
DB search
MNTVALRVAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMQELKALEADHPELVTSDSPTQ
RVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTFCCELKLDGLA
VSLLYEYGVLVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVFMKHGG
FEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPASHW
ERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSELGFDIDGVVVKVDSLALQERL
GFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHN
ADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPVACPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPADLFRLSAG
SMTGLDRMGPKSAMNVVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFA
ADEDALLAVPDVGKIVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSP
FAGKTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGI
AVIDEAEMIRLLGA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgaatacggtcgcactgcgggtagcggagttgcgccgggtcttacgccatcacgaatac
aaatatcacgttgaagatgcgcctgaaattcctgatagcgaatatgacaaactcatgcag
gaactgaaagcgttagaggccgatcacccagagctggtgacgagtgattctcctacgcag
cgcgtcggcgcggcaccgctagcggcatttgagcaggtccgtcatgaagtgccgatgtta
tcgttggataacgtatttgatgaagagagctatctggccttcagcaagcgaattggtgac
aggctgaagaacggtgacgacctgacattctgctgcgaactgaaactggatggtttggct
gtcagcctgttatatgaatatggcgttctggtacaggccgccacgcgtggggatggaacg
actggggaaaacatcaccagcaacatccgtaccgttggagcgatcccattgcgccttgag
ggtgagaatattccgcgccgtgttgaagtacgcggtgaagtgtttatgaagcatggcggt
tttgaaaagttgaatgaagaggctcgccgcacaggaagcaaagtctttgctaacccgcgt
aacgctgccgcgggatcgctgcgccaactcgacccacgcatcacggctaaacgcccactg
accttcttctgctatggcgtcggcctgctggaaggcggtgaactgcccgctagtcactgg
gagcgcctgatgcagttcaaggcatggggattgccagtgagtgacagaatcaagctctgt
accggcccggccgaggtgctcgatttttatcgtcaggttgaacagacccgcagtgagtta
ggtttcgatattgacggtgtcgtcgttaaagttgactcgttggcgttgcaggaacgatta
gggtttgttgctcgtgcgccgcgctgggcggtggcctttaaattccccgcgcaggaacag
ctaacctgggtgcgcgatgtcgaatttcaggtgggacggacgggggcgattacgcccgtt
gcgcgtctggagccggttgctgtggctggcgtgattgtcagcaacgccacattgcataat
gccgatgaaattgagcggctaggtttgcagattggcgatcgtgtcattgtgcgtcgagcg
ggggatgtgatcccgcagatcgtcggtattgttgaatctgagcggccagaaaccgtgcaa
ccgatcgtcttccccgttgcttgcccggtgtgtggatctgacgttgagcgtgtggaaggg
gaagccgtcacgcgttgtaccggtggtttgatctgtggtgcccagcgtaaagaggcactg
aagcattttgtttcccgccgcgcgctagatgttgagggtatgggcgataagatcatcgat
caactggtggaaaaagagtacgtcaaaacgcctgccgatctgtttcgtctaagcgccggg
agcatgacggggctggatcgcatggggccgaagtccgcgatgaacgtggtcaacgcactg
gaaaaggcaaaaagcaccacgctggcgcgttttttgtacgcgttggggatccgtgacgtt
ggagaatcgactgccgccaatctggctgcccattttggttcgctggaggcgctttttgcg
gcagatgaagacgcgctgctggcggtgccggatgttggtaaaatcgttgccgcgcatgtg
cgccattttcttgaagaagagcacaaccaaactgtgatccgcgagctgaccgatcctgcc
ggcatcaacatccactggcctgaggttcaggtcgtcaatgccgaagagatcgacagcccg
tttgcgggaaaaacggtggtattgaccggatcgctgagtattttgtcccgcgatgaagcg
aaagatcggctaacggcgttaggggcaaaagtcagtggtagcgtctcgaagaaaaccgac
atggtgattgccggtgaagccgctggctctaaattggcgaaggcgcaagagttggggatt
gcggtgatcgatgaggcggaaatgatccgattattaggggcgtaa
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