Pectobacterium parvum: LOZ86_00930
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Entry
LOZ86_00930 CDS
T07916
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppav
Pectobacterium parvum
Pathway
ppav03030
DNA replication
ppav03410
Base excision repair
ppav03420
Nucleotide excision repair
ppav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOZ86_00930 (ligB)
03410 Base excision repair
LOZ86_00930 (ligB)
03420 Nucleotide excision repair
LOZ86_00930 (ligB)
03430 Mismatch repair
LOZ86_00930 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppav03032
]
LOZ86_00930 (ligB)
03400 DNA repair and recombination proteins [BR:
ppav03400
]
LOZ86_00930 (ligB)
Enzymes [BR:
ppav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LOZ86_00930 (ligB)
DNA replication proteins [BR:
ppav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LOZ86_00930 (ligB)
DNA repair and recombination proteins [BR:
ppav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LOZ86_00930 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOZ86_00930 (ligB)
MMR (mismatch excision repair)
DNA ligase
LOZ86_00930 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LOZ86_00930 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UFK39520
LinkDB
All DBs
Position
216432..218123
Genome browser
AA seq
563 aa
AA seq
DB search
MWLRIRTFLIIIVVGGISSFPTVAAVCPDWDNTRVGKEIDALRQQLEQWDDVYYTEGKSP
IEDDVYDQLRDQLNQWLGCFQPQNSIPVRLPDNGKQPHPVAHTGLKKLSERRQLVQWIAQ
REDLWIQPKVDGVAVTLVYQHGKLMSAVSRGNGLQGEDWTEKVRQIPGIRHLLTDAPSSL
VLQGELFLKMTDHRQRTQGGVNARSVVAGEMRRHQPSSVLSQIGLFVWEWPDGPKTMPER
LEKLKEMGFAMTADYTHAIGSFADAEKWRHHWYHNPLPFVTDGVVIRQTKEPQGRYWRNI
SADWAIAWKYPPVNQVAEVADVAFSVGRTGKIAVVLKLNPLKLDDKSVSRVNVGSLSRWK
QWDVLPGDRVSVSLAGQGIPRLDNVVWRGTERPAIVFPGEHDFHAFSCFRYSAVCQQQFL
ARLVWLSGEHGLNLAGVREGMWLRLIQHDLLEDVLSWLSLTEAQLNAVNGMGDKRARDIY
DSLQSARQMPLSRWLLALGIPVPRSAINALDDMDWLALQQWTAQQWRQFSGIGERRAEEI
MAFLKHPIVVELITRLDREGIHR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtggctcaggatccgcacatttttgatcatcatcgtcgttgggggtatcagcagtttc
ccaactgtggccgcggtgtgccctgattgggataacacacgggttggcaaagaaattgat
gcattgcgtcagcagttagaacagtgggatgacgtgtattacaccgaagggaaaagcccg
atagaagatgacgtttatgatcagctgcgggaccagttaaaccagtggttaggctgtttt
cagccccaaaactcgattcccgtacggttacccgataatggcaagcagcctcatcctgtt
gctcatacgggactgaaaaaattgtccgagcgtcggcaactggtgcaatggatcgcacag
cgtgaggatttatggattcagccaaaagtagatggtgtagccgtcacactcgtctatcag
cacggcaagctcatgtccgcggttagccgaggtaacggcctgcaaggtgaagactggacg
gaaaaagtgcgccagattccgggaattcgtcatctattaaccgatgcgccttcctcattg
gtattacaaggggaactattcctgaagatgaccgatcatcgacagcgtactcagggcggc
gttaatgcccgttcggtcgtggccggtgaaatgcgtcgtcatcagccatcttctgtgttg
tcgcaaattggtctgtttgtctgggaatggccggatggaccaaagacgatgcccgagcgt
ctggagaaattgaaggaaatggggtttgcgatgacggcggactatacccatgctattggg
tcattcgctgacgcggagaaatggcgccatcactggtaccacaacccactgccttttgtg
acggatggtgtggttatccgccagactaaagagcctcaggggcgctattggcgtaatata
tcggccgactgggcgatcgcatggaaatatccgcctgttaatcaggttgcggaagtagct
gatgtggcgttttctgtcggacggacgggtaagatcgccgtggtgttaaaactcaatcct
cttaaattggatgataaatcggtcagccgggtgaatgtgggctcgctgtctcgttggaaa
cagtgggacgtgttgcctggcgatcgggtgagcgtcagcctggcggggcagggaattcca
cgtctggataatgtggtatggcgtggcactgagcggccagccatcgtttttcccggtgaa
catgatttccatgcttttagctgttttcggtatagcgcggtttgccagcagcaatttctg
gcgcgcttagtctggttgagtggagagcatggattaaatctggcgggagtgcgtgaaggg
atgtggctgcgcctgatacaacatgatttactggaggatgtgctgtcatggctatctctg
acggaggcacagcttaatgcggtcaatggcatgggcgataagcgggcgcgagatatctat
gatagcttacaatcggcacggcagatgccgttatcccgctggctccttgcgctgggtatt
cctgttcctcgctccgccattaacgcattggatgatatggattggctggcgttacagcag
tggacagcacaacagtggcgacagttctccggtattggagagcgacgtgcagaagagatt
atggcgttcctgaagcaccctatcgtggtggaattaattacccgattagatcgtgaaggc
atacatagataa
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