Pseudomonas putida BIRD-1: PPUBIRD1_4393
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Entry
PPUBIRD1_4393 CDS
T01975
Name
(GenBank) C4-type zinc finger DksA/TraR family protein
KO
K06204
RNA polymerase-binding transcription factor
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppb03000
]
PPUBIRD1_4393
03021 Transcription machinery [BR:
ppb03021
]
PPUBIRD1_4393
03009 Ribosome biogenesis [BR:
ppb03009
]
PPUBIRD1_4393
Transcription factors [BR:
ppb03000
]
Prokaryotic type
Other transcription factors
Others
PPUBIRD1_4393
Transcription machinery [BR:
ppb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription elongation factors
PPUBIRD1_4393
Ribosome biogenesis [BR:
ppb03009
]
Prokaryotic type
rRNA transcription factors
PPUBIRD1_4393
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DksA_N
zf-dskA_traR
BDV_P10
Motif
Other DBs
NCBI-ProteinID:
ADR61966
LinkDB
All DBs
Position
4904083..4904529
Genome browser
AA seq
148 aa
AA seq
DB search
MSTLEKQKANQNLYGVAPYQETKGEEYMGEPMRKHFTKILTGWKQELMVGVDKTVDHMKE
EAANFADPADRASQEEEFALELRNRDRERKLIKKIDKTLQKIQDEEYGWCESCGIEIGLR
RLEARPTADLCFDCKEIAEKKEKTVGKG
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccctagaaaagcaaaaagccaaccagaatctttatggggttgcaccctatcag
gagaccaagggtgaggagtacatgggtgagcccatgcgcaagcacttcaccaagatcctc
actggctggaagcaagagctgatggtcggcgtcgacaagaccgttgaccatatgaaagaa
gaagcagccaactttgcagatcccgcagaccgcgcatcccaggaagaggaattcgccctc
gaactgcgcaaccgcgaccgcgagcgcaagttgatcaagaaaatcgataaaaccctgcag
aagattcaggacgaagagtacggctggtgcgagtcgtgcggcatcgagatcggcctgcga
cgcctggaagcccgccctaccgccgacctgtgcttcgactgcaaggaaattgccgagaaa
aaggaaaaaacggtcggcaaaggctga
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