Pelobacter propionicus: Ppro_3071
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Entry
Ppro_3071 CDS
T00436
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppd
Pelobacter propionicus
Pathway
ppd03030
DNA replication
ppd03410
Base excision repair
ppd03420
Nucleotide excision repair
ppd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ppro_3071
03410 Base excision repair
Ppro_3071
03420 Nucleotide excision repair
Ppro_3071
03430 Mismatch repair
Ppro_3071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppd03032
]
Ppro_3071
03400 DNA repair and recombination proteins [BR:
ppd03400
]
Ppro_3071
Enzymes [BR:
ppd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ppro_3071
DNA replication proteins [BR:
ppd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ppro_3071
DNA repair and recombination proteins [BR:
ppd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ppro_3071
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ppro_3071
MMR (mismatch excision repair)
DNA ligase
Ppro_3071
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ppro_3071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
HHH_5
TraI_2B
Motif
Other DBs
NCBI-ProteinID:
ABL00667
UniProt:
A1ATJ6
LinkDB
All DBs
Position
3361139..3363253
Genome browser
AA seq
704 aa
AA seq
DB search
MQNSPTTEQTKNIVAERIQELRQLIAHNNRLYYENIPPRREIHDYEYDELFKELQELESR
FPEFQSADSPTQIVGGSVSEGFKKVQHSVPMLSIENKPVTKMLSEVRSIIKELKDDAISI
DIVAEPKIDGLSCSIRYEKHQLVRAATRGDGLEGEDITVNVHSISEIPKILPLDAPEVIE
IRGEVYMSNSDFKQYTAQQNKIGEKPPENPRNAAAGSLRQLDPSVTASRPLRFFAYAWGE
ISNSFAKSQWDALQTLRGWGFKVCDDIRLLYSSDELNSYFEEMQERRSELDFTIDGIVYK
LNSLSLQERVGQTNRAPRWAAAQKFPPEKRETLLQNITISVGRSGALTPVAELLPVRLLG
TTVSNATLHNQDEVECKDFRIDDTIVVQRAGDVIPQVVSVVIEKRLSGSIPFVFPSACPV
CGSKAVREPREAVWKCTGGLTCPAQSLERLKHFVSRDAFNIDGLGEKNIELFYNKGLLAS
PVDIFRLEEILSPPLLWQQKPSEFKPLQEWDGWGELSANNLFRAIRTKQKITLYRFIYAL
GIPKVGEVTAKILADNYVSLDNWQSSMLKAAERESECYQHLISIDGIGSVVADEIVSFFA
EAHNIQVLDSLKNYLSVEDFTKPAIISSNISGKIVVFTGELEKRSRKAAKIEAEKFGAKV
ATDVSRKTDIVIAGTDPGSKLRKAQELGIKILSEDEWEHLINEK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaactctccaaccacggaacaaaccaaaaacattgttgcagaacgtattcaagag
cttcgtcaactcatagcacacaacaatcgtttatattatgaaaacattcctccacggcga
gagatacatgattatgaatatgacgagcttttcaaggaattgcaggaacttgaatcaaga
tttccggagtttcaatcagcggacagtccgactcaaatagtaggtggttctgtttcggaa
ggatttaaaaaagtccagcactcagtcccgatgttgtctattgaaaacaagccagttaca
aagatgctttctgaagtaaggagtattatcaaagaattaaaagatgatgccatatcgatt
gatattgtagccgagccaaaaattgacggtctttcatgctcaatacgttacgaaaagcat
caattggtacgggcagccactagaggagacggtcttgaaggcgaagacattactgttaat
gtccactcaattagtgagatacctaaaatattgccgcttgatgccccagaagtaatagaa
atacggggcgaagtgtacatgtcgaattctgattttaaacagtacaccgcgcagcaaaac
aagattggggaaaagcctcctgaaaaccctcgtaatgcagccgccggaagcttacgtcag
cttgatccttctgtaaccgcatctcgtccgctccgcttctttgcgtatgcgtggggagag
atttccaattcctttgctaagagccagtgggacgccttacagaccttgcgtggatgggga
tttaaggtatgtgatgatatccggctattgtattcttcagacgagctaaattcatatttt
gaggaaatgcaagagcgccgtagtgaactcgatttcaccattgatgggatagtatacaag
cttaacagcctatcgcttcaggaacgagtaggacagaccaaccgggctccacgatgggct
gcagcccaaaaattccctccggaaaagcgagagactcttctacaaaatatcacaatatct
gttggtcgaagcggagcactcaccccagtcgcagaacttttgccggtccgcctgcttggt
actacagtttcaaatgcaaccctgcataaccaggatgaagtagagtgtaaagatttccga
atcgatgacaccatagtagtacagcgtgctggggacgttattcctcaagtggtttctgtc
gtcatagaaaaaaggctttctggtagcattccgtttgtttttccgtcagcctgcccagtc
tgtggtagcaaagctgttcgagaaccaagagaagctgtctggaaatgtactggaggtctg
acatgtcccgcacaatcattggaaagactaaaacatttcgtatctcgtgatgcctttaac
attgatggacttggcgaaaaaaacatcgagttgttttacaataaaggtctgttagcatct
ccagtagatatattcagacttgaagaaattctttcaccaccattactttggcaacaaaaa
ccatcagaatttaaaccactgcaagaatgggatggatggggtgagctttccgccaacaat
ctttttagggctattcggaccaaacaaaagatcacactttatcgttttatatatgcgctt
ggtattccaaaagttggcgaggttacagcaaagatacttgctgataactatgtcagtctc
gacaattggcaaagctcaatgcttaaagcagcagaaagagagtctgagtgctatcaacat
ctaatttcaattgacggcatcggctcagtcgttgcagatgaaatagtaagtttttttgca
gaagcccataacatccaagtcctcgattctctgaaaaattatcttagcgttgaggatttt
accaaaccggccataatatcctccaatatttccggaaaaatcgtggtttttacaggagaa
ttggagaagcgcagccgcaaggcagcaaaaattgaagcagaaaaatttggggcaaaggta
gctaccgatgtatcaagaaaaactgacattgttattgcagggacagacccaggatcaaaa
ttgcgcaaggcacaagaactaggaattaaaattctatctgaagatgagtgggagcatctg
atcaatgaaaaatga
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