Proteus penneri: I6G31_15315
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Entry
I6G31_15315 CDS
T07624
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppee
Proteus penneri
Pathway
ppee03030
DNA replication
ppee03410
Base excision repair
ppee03420
Nucleotide excision repair
ppee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6G31_15315 (ligA)
03410 Base excision repair
I6G31_15315 (ligA)
03420 Nucleotide excision repair
I6G31_15315 (ligA)
03430 Mismatch repair
I6G31_15315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppee03032
]
I6G31_15315 (ligA)
03400 DNA repair and recombination proteins [BR:
ppee03400
]
I6G31_15315 (ligA)
Enzymes [BR:
ppee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6G31_15315 (ligA)
DNA replication proteins [BR:
ppee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6G31_15315 (ligA)
DNA repair and recombination proteins [BR:
ppee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6G31_15315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6G31_15315 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6G31_15315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6G31_15315 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QPT33439
LinkDB
All DBs
Position
3365983..3368010
Genome browser
AA seq
675 aa
AA seq
DB search
MNKNTQQKIDKLRVTLRHHEYLYHVMDAPEIPDAEYDRLMNELKALEAEYPELITSDSPT
QRVGALPLTAFEQVRHEIPMLSLDNAFDETSYLAFDKRLRDRLKNSEEITFCCELKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLRLYGENIPARIEIRGEVFMNEK
GFEYLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPTSH
YKRLQQFKKWGLPVSDAVKLCTGSKAVLDFYHHVEEIRPNLGFDIDGVVIKVDDIALQEE
LGFVSRAPRWAIAYKFQAQEQMTIIKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH
NADEIERLGIRIGDTVVIRRAGDVIPQVVSVIEEKRPADAQEIIFPTQCPICQSDIERIE
GEAVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLDE
KILSGLERMGEKSAKKLITALDKAKSTTFARFIYALGIREVGEATASGLTAHFSTLEALR
NADVDALKLVPDVGDIVAKHVVNFFQEEHNRTVIDQLINDAGITWQAPIIVTHEVGENPF
AGKTVVLTGSLSQLTRDEAKDRLVALGAKVSGSVSKKTDMVIAGEAAGSKLVKANELGIT
VIDEDEMIRLLDQSK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacactcaacaaaaaattgataaacttcgcgttactctacgtcaccatgaa
tatctctatcatgtcatggacgcacctgaaatacctgatgctgaatacgatcgcttaatg
aatgagctaaaagcattagaagctgaatatcccgaattaattacctctgattcgcctaca
cagcgagttggtgccttacctctaactgcatttgagcaagtgagacatgaaattccgatg
ctctccttagataatgcttttgatgaaacaagctatctggcgtttgataagcgtttacgt
gatcgtttaaagaatagtgaagagattactttctgctgtgaattaaaattagatggattg
gctgtcagtttactttatgaaaatggagtattagtacaagctgcaacgcgtggtgatggt
acaacaggggaaaatatcactgagaatgtaagaacgatcaaagccattccactgcgttta
tatggtgaaaatattcctgctcgtattgagatccgtggcgaagtctttatgaatgaaaaa
gggtttgaatatttaaatgaggaagctcgtcgcacaggtggaaaagtttttgctaaccct
cgtaatgctgcagccggctcattaagacagcttgatccccgtatcacagcaaaacgtcca
ttaacctttttctgttatggggtcggggtactcgaaggtggagaattaccaacaagccac
tataagcgcctacaacagtttaaaaaatggggattgcccgttagtgatgctgttaaactt
tgcacaggtagcaaagcagtacttgatttttaccaccatgtagaagaaattcgccctaac
ttaggctttgatatcgatggtgtcgttattaaggtggatgatattgctctgcaagaagag
ctgggttttgtctcaagagcaccacgttgggctattgcttataaatttcaagctcaagag
caaatgacgattatcaaagatgtcgaatttcaagttggacgtactggagcaattacccct
gttgctcgtttagagccggtacaagttgctggtgttgttgtgagtaatgctacattacac
aatgctgatgaaattgaacgcttagggatacgcattggcgatacggtggttattcgtcga
gcaggtgatgttattcctcaggttgttagtgtgatcgaagagaaacgtccagctgatgca
caagagattatttttccaacgcaatgcccaatttgccaatctgatatagagcgtattgaa
ggcgaagcggtagcgcgttgtacaggaggattaatttgtggtgcacaacgtaaagaagca
cttaagcattttgtttctcgtcgtgcgatggatgtcgatggtatgggcgataaaattatc
gaccaactggttgaaaaagagtatgtcaaaacgccagcagatctttttcgtttagatgaa
aaaatcctatctggtttagagcgaatgggtgaaaaatcagcaaaaaaattgatcactgct
ttagacaaggctaaatcaacgacatttgcgcgttttatttatgctctcggaattagagaa
gtcggtgaagcaacggcaagtggattaaccgcccatttttctacgcttgaagcattacga
aatgcggatgttgacgcgctaaaattagtccctgatgtaggcgatatcgtggctaaacat
gtcgttaatttcttccaagaagaacacaatagaacggttattgatcaattgatcaatgat
gctggtattacatggcaagcacctattattgtgactcatgaagtgggtgaaaatcctttt
gcaggtaaaactgtcgtgttaactggatcactttcacagttaacccgtgatgaagcaaaa
gacagattagttgcattaggtgcaaaagtgagtggaagtgtttctaaaaaaactgacatg
gtgattgcgggtgaagcggctggctctaagttagtgaaagctaatgaattagggataact
gttatcgatgaagatgaaatgatacgattacttgatcaatcgaaataa
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