Pseudomonas pergaminensis: KUA23_22355
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Entry
KUA23_22355 CDS
T08563
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppeg
Pseudomonas pergaminensis
Pathway
ppeg03030
DNA replication
ppeg03410
Base excision repair
ppeg03420
Nucleotide excision repair
ppeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KUA23_22355 (ligA)
03410 Base excision repair
KUA23_22355 (ligA)
03420 Nucleotide excision repair
KUA23_22355 (ligA)
03430 Mismatch repair
KUA23_22355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppeg03032
]
KUA23_22355 (ligA)
03400 DNA repair and recombination proteins [BR:
ppeg03400
]
KUA23_22355 (ligA)
Enzymes [BR:
ppeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KUA23_22355 (ligA)
DNA replication proteins [BR:
ppeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KUA23_22355 (ligA)
DNA repair and recombination proteins [BR:
ppeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KUA23_22355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KUA23_22355 (ligA)
MMR (mismatch excision repair)
DNA ligase
KUA23_22355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KUA23_22355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
Tla3_C
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
USV99750
UniProt:
A0ABD7TDK5
LinkDB
All DBs
Position
complement(4953336..4955693)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ
RVGSAALSAFTQVRHEIPMLSLGNAFDEATMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DTHIGNLQQLKKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFKVNSIAS
QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVAERRPENARAVQIPESCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYKLKYEQIIDLEGFADISSKKLITAIENSKTPTLARFIYALGIPDVGEET
AKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPQECAL
QLQDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKADWLDMRQAL
PEKQAKAVREFFDNADNANHALAIEQQLKDFGMHWLSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVAFLAK
HNITV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccacacccgcatcctcgaactgcgcgctgaactggatcagcacaactac
cgttaccatgtcctcgacgagccgagcatcccggacgccgagtacgaccggctgttccac
gagctcaaggccctggaagccgagcacccggacctggtcacgcgcgattcgccgacacag
cgggtcggcagtgcggcgttgtcggcgttcacccaggtgaggcacgagattccgatgctc
agcctcggtaacgcctttgatgaagccaccatgcttgagtttgatcgccgggtcaccgaa
ggcctcgacctgccggtgggtgatctgttcgggggcggcgcggccgttgagtacagctgc
gaaccgaaactggatggtctggcggtcagcctgttgtatcaggacggcgaactggtacgc
ggcgccacccgaggcgacggcaccaccggcgaagacatcagcgtcaacgtgcgcaccgtg
cgcaatattccgttgaaactgcacggcagcggttggccagcgaccctggaagtgcgtggc
gaagtgttcatgtccaaggccggtttcgaacggctcaacgcctcgcaactggaggtcggc
ggcaagactttcgccaacccgcgcaacgcggcggcgggcagcttgcgccaactggactcg
aagatcaccgccagtcgcccgttggaattctgctgctacggtgtcaccaccgacatcagt
gacacccatatcggcaacctgcaacaactgaagaaatggggcatgccgatcagccatgag
ctgaaactcgccaaggggatccaggattgtctggactactaccgtgacatcggcgaacgg
cgtaacagcctgccgtatgaaatcgacggcgtggtgttcaaggtcaacagcattgcttcg
cagcgcgaactgggcttccgcgcccgcgaaccgcgctgggccatcgcgcataaattcccg
gccatggaagagctgaccgaactgctcgacgtggaattccaggtcggccgcaccggcgct
gtcacgccggtggcgcggctcaagccggtcaaggtcgcgggtgtgaccgtgtccaacgct
accttgcataacatggatgaagtcgcgcgcctgggcctgatgatcggcgacaccgtgatc
atccgccgcgccggcgatgtgatcccgcaggtggtctccgtggtggccgagcgccgcccg
gaaaacgcccgcgccgtgcagatccccgagagctgtccggtgtgcggctcccacgtggag
cgcacgcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgaaggcgcggtgtac
cgctgcgtcggccgcctggcctgtggtgcgcagctcaagcaggcgatcattcatttcgtc
tcgcgtcgcgccatggacatcgacggcctgggcgacaagaccatcgagcagttggtggat
gaaaaactcatcggctcgcccgcagacctctacaagctcaagtacgagcagatcatcgac
ctggaaggcttcgccgacatctccagcaagaagctgatcaccgccatcgaaaacagcaag
accccgaccctggcacggtttatctacgccctgggcattcccgacgtgggcgaggagacg
gccaaggtgctggcgcgctcgctggcctccctggagcgtgtgcagaaggccttgccggaa
gtgctgacgtacttgccggacgtgggcctggaagtggcgcacgagattcacagcttcttc
gaggacagccacaaccaggacgtgatcggcgcgctgctgtcgccgcaggaatgcgccttg
cagctgcaggatcagggcgagctgagcgccgagttcgccgccagtaccaccctgggtggc
ttgctcgacaagctgcacgtaccgagcgtcggccccggcgcggcgcagaagctggcggac
aaattcgtcacccttgaaggcgtgatcaaggccgactggctggatatgcgccaagccctg
cccgagaagcaggccaaggccgtgcgcgagttcttcgataatgcagacaacgccaaccac
gccctggccatcgagcagcagctcaaggacttcggcatgcactggctgagcgagaagaaa
gtcgtggaaggtttgcctgaagcagggcacacctgggtgctcaccggttccctggagctg
atgagccgtgacgtggccaaggacaagctcgaaagcctcggtgccaaggtggcgggttcc
gtctcggcgaagacccactgcgtagtggcggggccaggcgccggttcgaaactggccaag
gccaacgagttgggcctgaaggtattggacgaagaggctttcgtcgccttcctcgccaag
cacaacatcactgtctga
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