Pseudomonas pergaminensis: KUA23_27945
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Entry
KUA23_27945 CDS
T08563
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppeg
Pseudomonas pergaminensis
Pathway
ppeg03030
DNA replication
ppeg03410
Base excision repair
ppeg03420
Nucleotide excision repair
ppeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KUA23_27945 (ligB)
03410 Base excision repair
KUA23_27945 (ligB)
03420 Nucleotide excision repair
KUA23_27945 (ligB)
03430 Mismatch repair
KUA23_27945 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppeg03032
]
KUA23_27945 (ligB)
03400 DNA repair and recombination proteins [BR:
ppeg03400
]
KUA23_27945 (ligB)
Enzymes [BR:
ppeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KUA23_27945 (ligB)
DNA replication proteins [BR:
ppeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KUA23_27945 (ligB)
DNA repair and recombination proteins [BR:
ppeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KUA23_27945 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KUA23_27945 (ligB)
MMR (mismatch excision repair)
DNA ligase
KUA23_27945 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KUA23_27945 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
DUF3701
HHH_2
Motif
Other DBs
NCBI-ProteinID:
USW00789
LinkDB
All DBs
Position
6145273..6146937
Genome browser
AA seq
554 aa
AA seq
DB search
MMHLLVALLLIALPLWVWAEECPDAARSQVGALAEQIRQWDDSYHRLGQSPVNDELYDQA
RQRLTHWHQCFPETAAAPANPLASSRGTLSHPVAHTGLEKLLDEQAVDAWLSTRQDVWIQ
PKVDGVAVTLVYRQGRLKQVISRGDGTAGHDWSASARKIPGIVQQLPKPIDLVLQGELYW
RLDDHVQSASGGLNARSKVAGLMNRKHLSDTDAAGIGLFVWAWPEGPAAFTERLAILARW
GFIDSRRYSQPIRDISEAAHWRAYWYNHPLPFASDGVVLHQAQHAPAKRWQASAPYWSAA
WKYPVTKALAWVRNVQFKIGRTGRITPMLELEPVRLDDRQISRVSAGSLKRWQALDIRAG
DQVSISLAGQVIPRLDEVVLRSPTRADLPVPNPARFHALSCWQLDPGCEEQLLARLTWLS
GNQGLALPYIGRETWNVLIQAGLIAGFLDWLTLDAAELANIDGFGDRSRARVLEGLHSAR
QRPFAQWLKALGVPPAARNNLEGDWQTLVARDTQAWLAIDGIGPGRAAQLSAFFRDPHVQ
AMAETLRVAGVDGF
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgatgcatttactggttgcccttttactcatcgcattacctctctgggtgtgggccgaa
gagtgccccgatgcagcccgttcacaggtgggcgccctggccgagcagatccgccagtgg
gatgacagttaccaccggcttggccagtcccccgtcaacgatgaactctacgaccaggcg
cgccagcgcttgacccattggcaccagtgtttcccggaaacggctgcggcgcctgccaac
ccactggcgagttcacgcggaaccctgtctcatcccgttgcccacactggcctggagaag
ctgctggacgagcaggccgtcgacgcctggttaagtacgcgccaggatgtctggattcaa
cccaaggtcgatggtgttgcagtgaccctggtgtatcgacaggggcgcttgaaacaggtc
atcagccgaggcgatggaacagcaggccacgactggtccgcctctgcgcgcaagattccc
ggcattgtccagcagttgcccaagcccatcgacctggtgctgcaaggcgagctctattgg
cgtctcgatgaccacgtgcagtcagcaagcggcgggctcaacgctcgcagtaaggtggcc
gggttgatgaaccgcaaacatttgagcgacaccgacgccgctggcattggcttgttcgtt
tgggcctggccggaaggcccggcagcgtttaccgaacgcctggccatcctggcacgctgg
ggtttcatcgatagccggcgctacagccagcccatccgcgacatcagcgaagccgcgcac
tggcgcgcctattggtacaaccaccccctgccgtttgccagcgatggcgtggtgctgcac
caggcacaacacgcacctgccaagcgttggcaagccagcgccccctattggtcagccgcc
tggaagtacccggtgaccaaggccttggcatgggtgcgcaacgtgcagttcaagattggc
cgcaccgggcgcatcacgcccatgctggaattggagccggtacggttggatgaccggcag
atcagccgggtgagcgctggctcattgaaacgctggcaggcactcgatatccgcgcgggc
gaccaggtttccatcagcctggcgggccaggttattcctcggctggacgaggtcgtcctg
cgcagccccacccgggcggacttgccagtgcccaacccggctagattccacgccttgagc
tgctggcaactggaccccggttgcgaggagcagttgctggcacgcctgacctggctgagc
ggcaaccagggcctggccttgccatatatcggccgcgagacctggaacgtattgatccag
gccggtctaatcgcaggctttctcgattggttgaccctggatgcggcagagcttgctaac
attgacggcttcggtgatcgcagccgcgcacgagtgctcgaaggcctccacagcgcgcgg
caacggccttttgcacaatggctgaaagccttgggtgtaccgcctgcggcacgtaacaac
ctggaaggcgactggcagacgctggtcgccagagacacccaggcctggctggccatcgat
gggatcggcccgggccgcgcggcgcaattgagcgctttttttcgcgacccgcatgtacag
gccatggctgaaacattacgcgtggcgggggtggacggcttttga
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