Paenibacillus peoriae: ABE82_22730
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Entry
ABE82_22730 CDS
T04053
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppeo
Paenibacillus peoriae
Pathway
ppeo03030
DNA replication
ppeo03410
Base excision repair
ppeo03420
Nucleotide excision repair
ppeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABE82_22730
03410 Base excision repair
ABE82_22730
03420 Nucleotide excision repair
ABE82_22730
03430 Mismatch repair
ABE82_22730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppeo03032
]
ABE82_22730
03400 DNA repair and recombination proteins [BR:
ppeo03400
]
ABE82_22730
Enzymes [BR:
ppeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABE82_22730
DNA replication proteins [BR:
ppeo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABE82_22730
DNA repair and recombination proteins [BR:
ppeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABE82_22730
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABE82_22730
MMR (mismatch excision repair)
DNA ligase
ABE82_22730
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABE82_22730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_ligase_ZBD
DUF669
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ALA44120
LinkDB
All DBs
Position
complement(5272944..5274959)
Genome browser
AA seq
671 aa
AA seq
DB search
MNPMHRMEQLVAELNTYNYHYYTLDEPKISDKEYDVLYDELVALEQTSGLVLPDSPTQRV
GGELLKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIE
LKFDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVPLTIPFRNGTIEVQGEGI
MNLSVLSKYNETAVDPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRIQFDSHQ
EMMTFLRENHFKVNPYLTYFDNFEDVMEQLIEIEESRAGLDYLIDGAVLKITDMRTREAL
GYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQNCTLNN
AGDIERKNLKFALGARVFIRRSNDVIPEILGKVTSENDGEEIVVPDHCPACGFPLQQRGA
HLFCDNKLGCKPQIVARISHFASRDAMDIETFSDKTAIQLHDELEVREPADLYTLEYDDL
VKLERFGEKKASNLLAALEKSKERDLASFLYALGIPNTGKATTRMLAEHYRDLHKTMSAT
VEELIELPDVGGIVAESIVAFFADPFTQAGIERMLSLGVKAQAPEAPQEKKTDSFFSGKT
VVLTGTLHQLTRDEAVSKLEALGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIED
EDEFIRLLEQE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaacccaatgcacaggatggagcagcttgttgctgaactgaacacatataactatcat
tactacacactggatgaacccaagatcagcgacaaagaatatgatgtgctttatgacgag
ctggtagcgcttgaacagacgagcggtcttgtgctgccggattcgccgacacagcgtgtg
ggtggggagttactcaaaggtttcacaccgcatcgccaccttgccccattatggagcctt
gataaagctcagaatatggaacagctgcgtgcatggaacgcgcgtgttgttaaactggtc
aatgattacaataccaagaacccggagcaacctttgccatctccaggctatgcaatagaa
cttaaatttgatggactgacgctgaacctgacgtatactgatggacagctggtacaggct
tccacccgcggtaatggcgttgtgggtgagggaatactggcacaggtgaagaccattaaa
tccgtaccacttacaattccttttcgaaatggaacaattgaagtacagggagaagggata
atgaatctctctgtactgtccaaatataatgagactgccgtggaccctcttaaaaatgca
cgcaacgccgcagctggcgcattgcgtaacttgaatcccaaagtgacagcagaacggcga
ttgaatgcatttttctacaatgtgggatatgcagaccgtatccaatttgacagccaccag
gaaatgatgactttcctgcgtgaaaatcattttaaggtaaacccttacctgacttacttt
gataattttgaagatgtaatggagcaactgattgagattgaagaatctcgtgccggattg
gattatctcattgatggggcagtattgaaaattacagatatgcgcacacgtgaggctctc
gggtataccgataaattcccacgctgggcggtggcatataagttcgaagctgaggaaacg
acaacggtgcttaactcggttgagtggaatgtaggacgaaccggtaaaatcaccccactt
gcaagggtagagccggtagagctggcgggagtcactgtacaaaattgtacactgaacaat
gctggtgacattgagcgcaaaaacctgaagtttgctttgggggcacgtgtgtttatccgt
cgctcaaacgatgtcattccggagatattaggaaaggtaacgtctgagaacgacggtgag
gaaattgtcgtaccagatcattgtccagcctgcgggtttccattgcagcagcgaggtgcc
catttgttttgcgacaataagctggggtgtaaaccacaaattgtggctcgtatttcccat
tttgcttcacgtgatgctatggatattgagacattcagtgacaaaacggccatacagcta
catgacgaactggaagtgcgcgagcctgcggatctgtatacactcgaatatgatgatctt
gtgaagctggagcggtttggtgagaaaaaggccagtaacctcttagcggcactagaaaag
agtaaagagagagatttggcttctttcctttatgctctgggtataccgaataccggtaaa
gcgacaacacgcatgttggctgaacattaccgtgatttgcacaagacgatgtccgctacg
gtggaagaactgatagaactaccggatgtaggcggaattgtagccgaaagcattgttgct
ttctttgccgatccatttactcaggcaggaattgaaagaatgctgtctctaggggtgaag
gctcaggcccctgaagctccacaggagaagaagacagacagctttttcagtggcaaaacg
gtcgtgcttacaggtaccttgcatcagcttacgcgtgacgaagctgtatccaagctggag
gcgctgggagccaaagttgcggggtctgtatcgaaaaagacggatctagtcatagctggt
gaaaaggctgggagtaagctagctaaggcccaacagctcggaattgacaccatagaagat
gaggatgaatttatcagactgctggaacaagaataa
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