KEGG   Prunus persica (peach): 18776740
Entry
18776740          CDS       T03092                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
pper  Prunus persica (peach)
Pathway
pper03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pper00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    18776740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pper03021]
    18776740
Enzymes [BR:pper01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     18776740
Transcription machinery [BR:pper03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     18776740
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 18776740
NCBI-ProteinID: XP_020419983
LinkDB
Position
G5:complement(10003594..10014837)
AA seq 1451 aa
MDNELYEEEGVPSGLITGIHLNVSTQEDIENISVKQIDAVTEVTDPKLGLPNPSFQCSTC
GAEKLKCCEGHFGDIKFPCTILHPYYLSEVTQILNKICPGCKSIRQNLRAKGAGSVIGHR
KLKGCKYCIGSSINYPRMKFKVSTRELFKRSAIIAEANGILPADYWDFIPKDAQQDESCM
KPNKRVLSHAQVHYLLKDVDTKFIEKIVPKTNSLSMGSFLVTPNCHRVTEVMHSFSNGQR
LMFDERTRAYRKLVDFKGVANELGSRVLDCLKISKLNSEKPSKDFISAQQKNIKDDPSKT
SGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSEIGIPCQIAERLQISENLNRWNIEKLDA
SCNLRLMVKGEMHVRRKGSLVWVRQTDELQMGDTIYRPLSDGDIVLINRPPSIHQHSLIA
LSVKILPITSVVSINPLCCSPFRGDFDGDCLHGYIPQSNDARVELRELVALDKQLINGQS
GRNLLSLSQDSLTAAHLIMEDGTLLNLLEMQQLEMFCWDVLPSPAVIKAPSLNSHAWTGK
QVFSMLLPSDFDYDFASDGVYIKNGELLSSEGSSWLRDTGGNLFQSLVNHFQGQVLDFLF
AAQEVLCEWLSMRGLSVSLADLYLASDSGSRNNLMEEILCGLQEAEQACIFKQLLVDNCQ
DFLMGCAEENRSPLTFDAEYFCHEKQKSAALSQVVHDAFKHIFRDIQSLAHKYAGKDNSL
LTMLKAGSKGNLQKLVQHSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTY
ECVESYIPSAVVKSSFLTGLNPLECFVHSVTSRDSSFSGNADLPGTLTRKLMFLMRDLYT
AYDGTVRNAYGNQLVQFSYDIDMDKSDSTSTSHAKSTTACDGIGGQPVGSLSACALSEAA
YSALDQPVSLLETSPLLNLKNILECGSKKSSAKQTLSLFLSKKLGRRRHGFEYGALEVKN
HLVGLTFSDIVSTVMIIFSSQSNSQKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARC
NSARPELKIVLRSLLITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIP
FLLGTVVKGFLEVKKVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNC
LQIMDLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCL
SATGEFVGLNAKGIAQQKGHTSVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAW
GNTPPSGTGRQFDILYSKEGLNLSKPLNPYDLLGSQISSSRENAFETSKAWNNTLDKCDV
TSIGLEKSESVFKSVIRKYLTINDIQKWTQTLKRILRKYDINESLTEGDKSILKMALHFH
PHKVDKMGSGVQDIKVGQHPKHENARCFMLVRIDRTEEDFSYHKCVLGALEIVAPERAKS
YRSKWMNHLPE
NT seq 4356 nt   +upstreamnt  +downstreamnt
atggacaatgaattgtatgaagaagaaggagtgccatctggtctcataactggcatacat
ctaaatgtttcaactcaggaagatatagagaatatatctgttaaacaaattgatgcagtc
actgaggtcactgatcctaagttgggacttccgaatccatcttttcagtgctctacttgt
ggtgctgaaaaattaaaatgctgtgaaggtcattttggggatatcaagtttccatgcacg
attctccatccctattatctttcggaagttacccaaattttaaacaagatttgcccagga
tgtaaatctatcaggcaaaatctaagggccaagggtgctggttctgtaattggtcatagg
aagctcaagggttgcaaatattgtattggaagttcgataaactatccaagaatgaaattc
aaagtttctacgagagagctctttaaaagaagtgcaataattgcggaagcaaatggaata
ttacctgctgactattgggactttattccaaaagatgcacagcaagatgaaagttgcatg
aaaccaaacaaaagagttctatctcacgctcaggttcattatttgttgaaggatgttgat
acaaaattcattgaaaagattgtaccaaagacaaactcactttctatgggttctttcctt
gtaactccaaattgtcatcgcgtgacagaagttatgcattctttttctaatgggcagcgg
ttgatgtttgatgaacggaccagggcttatagaaagcttgttgatttcaaaggtgtagct
aatgagttgggttctcgtgttttggactgcctgaaaatttccaagctaaactcagaaaaa
ccaagcaaagattttatttctgctcagcaaaaaaatattaaagacgatccttcaaaaaca
tctggcttgagatggatcaaagatgttgttctagggaagcgaagtgaccactgtttccgc
acagttgttgttggtgatccaaacatcaagctcagtgaaattggcataccatgtcaaatt
gcagagaggttgcagatttctgagaatctgaacagatggaacatcgaaaagttggatgcc
tcctgcaatctacgccttatggtgaaaggcgagatgcatgtgcgtagaaaaggtagtctg
gtttgggtacgccaaacagatgaattgcagatgggagatactatttaccggcctttgagt
gatggagatattgtgctgataaataggcctccatcaatacatcaacactccctgatagct
ttatctgtcaagatccttccaataacttctgttgtatcaataaacccactttgttgctct
ccttttcgtggtgattttgatggtgattgccttcatggttatattcctcaatcaaatgat
gccagagttgagcttcgagagcttgttgctttagataagcaattgattaatgggcagagt
ggtaggaacctgctctcacttagtcaggatagcttaactgcggcccatttgatcatggag
gatggcactctcttgaatctacttgaaatgcaacagttggaaatgttctgctgggatgta
ctgccatcaccagcagttattaaagcaccctcacttaatagccatgcttggactggaaag
caagtattcagcatgctcctaccttcagattttgattacgattttgcttcagatggtgtt
tatattaaaaatggggagctgttatcttctgaaggttcttcttggttgcgagacacaggc
ggcaatctttttcagagccttgttaatcatttccagggtcaggtacttgacttcttgttt
gctgctcaggaggttctttgtgagtggttgtcgatgaggggcttgagtgtctctctcgcg
gacctgtacctcgcttctgactcaggttcaaggaataatttgatggaggaaattttatgt
gggttgcaagaagcggaacaggcgtgtatatttaaacagttgttggtggataattgtcag
gactttctcatgggatgtgcagaagagaatcgaagtcctctgacttttgatgcagaatac
ttttgtcatgagaagcagaaatctgctgcccttagtcaggttgttcatgatgctttcaag
cacatttttcgggatattcaaagtttagcacacaaatatgctggtaaggacaactctttg
ctgactatgcttaaggctggaagcaagggtaatttgcagaaattagttcagcacagtatg
tgccttggtttgcaacactcactgattccattatcattcagaattcccaaccagctctca
tgtgctgcatggaataatcaaaaggcatgcagtttaattcagaaggttgagggaacttat
gaatgtgttgagtcctacatcccatctgccgtggttaaaagctctttcttgacaggctta
aatccgttagaatgttttgttcattccgtaacaagtcgagacagttcttttagtggtaat
gctgatcttccagggactttgactcgaaagctaatgtttttaatgcgggatttgtacact
gcttatgatggaacggtgagaaatgcatatgggaaccagcttgttcagttctcctatgat
attgatatggacaaatcagatagcaccagtacctcacatgccaagagtactactgcttgt
gatggtataggtggccaacctgtcggctcattgtctgcttgtgccctatctgaagctgca
tacagtgctttagatcaaccagttagtcttcttgaaacttctccactgctaaatctgaag
aacatcttggaatgtggttcaaagaaaagtagtgctaagcaaactctgtctctattttta
tctaagaagcttggaagacggaggcatggttttgagtatggagccttagaagttaagaat
catttggtgggactgacattttccgacattgtttctactgtcatgataatcttctcctca
caaagtaatagccaaaagcgtttcagcccatgggttacccactttcatatatgcaaggaa
attgtgaggaaaaggaggttgaaggtgcattccgttgttgactccctttatgcaaggtgc
aattcagccagacctgaattaaaaattgttcttcgcagtttgctgattacaagcaagggt
tgttctgcagctcagacatgcaacggagatgacgatacattttgcatcactgtcactatg
cctgaaaactccaaaaattcttctgaacagctggatatagctcgagacttggtgatacct
ttccttcttggaacagttgttaaaggattcctggaggtgaaaaaggtggatattttatgg
aatgaccaccccagggaatcaaaaaagattcatggttcttctggtgaactctacttaagg
gtttctatgtcgggaaagactggcaggagaaggctttggagtatgcttatggataactgt
ctccagattatggatttgattgattggtcacgaagtcatccagataacgtccatgattat
tgcatagcatatggaatagatgctgggtggaaatattttctcaataatttagagaccgca
gccaatgacattggaaaggacatacttcctcaacatttgattcttgtggctgattgtttg
tcagcaaccggcgagtttgttgggttgaatgccaaaggcattgcccaacagaaaggacac
acatctgtatcctcgccatttgtacaagcgtgtttttcaagtcctggtgcttgctttata
aaagctgccaagggtggagttgtggatgaacttcatgggagtgtggaagcattggcatgg
ggaaatactcctccttcagggactggcagacagttcgacatattatattctaaggaggga
ctcaatctatcaaagccattgaatccttacgacctactgggcagccaaattagttccagt
agagagaatgcatttgaaacgtctaaagcttggaacaatacactagacaaatgtgatgta
acatctattgggcttgagaagtcagagagcgtcttcaaatcagtcataagaaagtatttg
actatcaacgatattcagaagtggactcagacattgaagcgtattttgcgcaagtatgac
atcaatgaaagtttaactgaaggggacaagtcaatcttgaagatggcattacattttcat
cctcacaaagttgataagatgggaagtggagttcaagacataaaggttgggcaacacccg
aagcatgagaatgcacgttgctttatgttggtacgaatagacaggacagaagaagatttt
tcgtaccacaagtgtgtactgggtgctctcgagattgtagctcctgaaagggcgaaaagc
taccggtcaaaatggatgaaccatttacccgagtaa

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