Pectobacterium peruviense: DUT67_04300
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Entry
DUT67_04300 CDS
T10302
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppeu Pectobacterium peruviense
Pathway
ppeu03030
DNA replication
ppeu03410
Base excision repair
ppeu03420
Nucleotide excision repair
ppeu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DUT67_04300 (ligA)
03410 Base excision repair
DUT67_04300 (ligA)
03420 Nucleotide excision repair
DUT67_04300 (ligA)
03430 Mismatch repair
DUT67_04300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppeu03032
]
DUT67_04300 (ligA)
03400 DNA repair and recombination proteins [BR:
ppeu03400
]
DUT67_04300 (ligA)
Enzymes [BR:
ppeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DUT67_04300 (ligA)
DNA replication proteins [BR:
ppeu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DUT67_04300 (ligA)
DNA repair and recombination proteins [BR:
ppeu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DUT67_04300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DUT67_04300 (ligA)
MMR (mismatch excision repair)
DNA ligase
DUT67_04300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DUT67_04300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
HeH
Motif
Other DBs
NCBI-ProteinID:
XDF55632
LinkDB
All DBs
Position
957379..959454
Genome browser
AA seq
691 aa
AA seq
DB search
MKPVKKEPAEVNVAALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHP
ELVTSDSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDELTF
CCELKLDGLAVSLLYEEGVLVQAATRGDGTTGENITSNIRTVGAIPLRLDGDNIPRRVEV
RGEVFMKHGGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLL
EGGELPESHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVK
VDSLALQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAG
VIVSNATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPAACPV
CGSDVERVEGEAVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKT
PADLFRLSAGIMTGLDRMGPKSAMNVVNALEKAKGTTLARFLYALGIRDVGESTAANLAA
HFGSLEALFAADEDALLEVSDVGKIVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPDVQ
VVNAEEIDSPFAGKTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGS
KLAKAQELGIPVIDEAEMIRLLDNYGDVSPL
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagtgaagaaagaaccagccgaagtgaatgtggccgcactgcgggtagcggaa
ttgcgccgggtcttacgccatcacgaatacaaatatcacgttgaagatgcgcccgaaatt
cctgatatcgaatatgacaaactcatgcaggaattgaaggcgttagaagccgatcaccca
gaactggtgacgagtgattctcctacgcagcgcgttggtgcggcaccgctggcggcattt
gagcaagtacgccatgaagtgccgatgctatcgctggataacgtatttgatgaagaaagc
tatctggccttcagcaagcgaattggcgacaggctgaagaacggtgacgagctgacattc
tgttgtgaactgaaactggatggtttggctgtcagcctgttgtatgaagagggcgttctg
gtacaggcggccacgcgcggggatggaacgactggggaaaatatcaccagtaatatccgt
accgttggggctatcccattgcgtcttgacggtgacaatattccgcgtcgtgttgaagtg
cgcggcgaagtgtttatgaaacacggcggctttgaaaagttgaacgaagaggctcgtcgt
acagggagcaaagtctttgccaacccgcgtaacgccgctgccggatcgctgcgtcagctc
gacccacgcattaccgctaaacgtccgctgaccttcttctgctatggcgtcggcctgttg
gaaggcggtgaactacccgagagtcactgggagcggttgatgcagttcaaagcgtgggga
ctgccggttagtgacagaatcaagctatgcactggtccagccgaagtgctcgatttttat
cgtcaggttgaacagacccgtagttcattaggctttgatattgatggcgtcgtcgtcaaa
gttgactcactggcgttgcaggaacggttagggttcgttgcccgtgcgcctcgctgggcg
gttgcatttaaattccctgcgcaggaacagctgacctgggtgcgcgatgttgagtttcag
gttgggcggacgggggcgattacgcccgttgcgcgtctggaacccgtcgccgtggcgggt
gtgatcgtcagcaacgctacgctgcataatgccgatgaaattgagcgactcggtttgcag
attggcgatcgagtgattgtgcgccgagcgggggatgtgatcccgcagatcgtcggcatc
gtcgaatctgaacggcccgaaaccgtgcaaccgatcgttttccctgctgcctgccccgtg
tgtggatctgacgttgagcgtgtagaaggggaagccgtcacgcgttgtactggtggtttg
atctgtggcgctcagcgtaaagaagcgctgaagcactttgtttctcgtcgtgcgctggat
gttgaaggcatgggagataagatcatcgatcaactggtggaaaaagagtatgtcaaaacg
ccagccgatctgtttcgcctgagcgctgggatcatgaccgggctggatcgcatggggccg
aagtccgcgatgaacgtggtcaatgcgctggaaaaggcaaaaggcacaacgctggcgcgt
ttcctgtacgcgttgggaatccgtgatgttggcgaatcgacggctgccaatctggctgcc
cattttggttcgttggaggcgctttttgctgccgatgaagacgcgctgctggaggtatcg
gatgtcggtaaaatcgttgccgcgcatgtgcggcacttccttgaggaagagcacaaccaa
accgtgatccgcgaactgaccgatcccgctggcatcaacatccactggcccgacgttcag
gtcgtcaatgccgaagagatcgacagcccatttgcagggaaaacggtggtattgaccgga
tcgctgagtattctgtcccgcgatgaagccaaagatcggctaacagcgttgggggcaaaa
gtgagcggcagcgtctcgaagaaaaccgatatggtgatcgctggtgaagcggcaggctct
aagctggcgaaggcgcaagagttggggatcccagtgatcgatgaggctgaaatgatccga
ctactggataattacggtgatgtaagcccgttatag
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