KEGG   Pseudomonas putida F1: Pput_2898
Entry
Pput_2898         CDS       T00537                                 
Name
(GenBank) ring hydroxylating dioxygenase, alpha subunit
  KO
K10619  p-cumate 2,3-dioxygenase subunit alpha [EC:1.14.12.25]
Organism
ppf  Pseudomonas putida F1
Pathway
ppf00622  Xylene degradation
ppf01100  Metabolic pathways
ppf01120  Microbial metabolism in diverse environments
ppf01220  Degradation of aromatic compounds
Module
ppf_M00539  Cumate degradation, p-cumate => 2-oxopent-4-enoate + 2-methylpropanoate
Brite
KEGG Orthology (KO) [BR:ppf00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00622 Xylene degradation
    Pput_2898
Enzymes [BR:ppf01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.12  With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor
    1.14.12.25  p-cumate 2,3-dioxygenase
     Pput_2898
SSDB
Motif
Pfam: Rieske Ring_hydroxyl_A Aromatic_hydrox
Other DBs
NCBI-ProteinID: ABQ79028
UniProt: A5W4G8
LinkDB
Position
complement(3286623..3287927)
AA seq 434 aa
MNNDKNLVEIDDENLLFRVARESFVSEEVLAEEYEKIFDRCWLYVGHTSEFKKPGDFVTR
TVARRNLLVTMGTDRTINAFFNTCPHRGATVCRERSGNSKNFQCFYHGWVFGCDGNLKSQ
PGKERYCADFITGGAGNLVPVPRFDIYAGFCFVSFNAEVEPLPDYLAGAKEYLELVSKYS
ESGMGITTGTQEYAIRANWKLLVENSIDGYHAVSTHASYLDYLKNINDGFSGAKLEGKST
DLGNGHAVIEFSAPWGRPIASWVPIWGEEGKQEIDQIYARLVELHGAEMADRMAYKNRNL
LIFPNLIINDIMAITVRTFYPQAPNYMHVNGWSLAPNEESDWARKYRLSNFLEFLGPGGF
ATPDDVEALESCQNGFSNYRLVPWSDISKGMGKETANYDDELQMRAFWTRWNQFIGGAPT
PDSGVQYIPTIALA
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgaataatgacaagaatctggtagagatcgacgatgaaaacctcttgttccgtgtggct
cgcgagtcgttcgtgagcgaagaggtcctggccgaggagtacgagaagatcttcgaccgc
tgctggctttatgttggccacacatccgagttcaaaaagcctggcgatttcgtcactcgc
actgtcgcgcgccgcaacctgctggtgacaatgggaacggatcggacgatcaatgctttc
ttcaatacctgcccgcaccgtggcgccactgtttgccgtgagcgatcaggcaactccaag
aacttccagtgcttctaccatggctgggtattcggttgcgatggcaacctgaagagtcag
cctggcaaggagcgctattgcgctgacttcattactggcggcgcgggcaacctagtgccg
gtgccgcgcttcgacatctacgccggcttttgcttcgtcagcttcaatgccgaggtggaa
ccactgcccgactatttggcaggagccaaggagtacctcgaactggtttccaagtattcc
gagagcggcatgggtatcaccaccggcacccaggaatacgccatccgtgcaaactggaaa
ttgctcgttgagaacagtattgacggctatcacgctgtcagcacccacgcgagttatctc
gactacctgaaaaacatcaatgatggcttttcgggcgccaagctcgaaggcaagagcact
gacctcggtaatggtcatgcggtaattgaattcagtgctccttggggacggccgattgcc
tcctgggttccgatctggggggaggagggcaagcaagagatcgaccagatctatgcacgg
ttggtcgaactgcatggtgcggagatggccgaccgcatggcgtacaagaaccgcaacctg
ctgattttcccgaatctcatcatcaacgacatcatggcaattacggtgcggaccttctat
ccgcaggcgccgaactacatgcatgtcaacggttggtcattggcgccgaacgaggagtcc
gactgggcgcgcaagtaccgcctcagcaacttcctggagttccttggcccaggcggtttc
gcaacgccggacgatgtcgaagcgctggagtcctgccagaacggcttcagcaactaccga
ctggtgccgtggagcgacatttccaagggaatgggcaaggaaacggccaactacgacgat
gagctgcagatgcgtgctttctggacgcgatggaaccaattcatcggtggcgcgcccacg
cccgactccggcgttcaatacatacctaccatcgctttggcctga

KEGG   Pseudomonas putida F1: Pput_2897
Entry
Pput_2897         CDS       T00537                                 
Name
(GenBank) aromatic-ring-hydroxylating dioxygenase, beta subunit
  KO
K16303  p-cumate 2,3-dioxygenase subunit beta [EC:1.14.12.25]
Organism
ppf  Pseudomonas putida F1
Pathway
ppf00622  Xylene degradation
ppf01100  Metabolic pathways
ppf01120  Microbial metabolism in diverse environments
ppf01220  Degradation of aromatic compounds
Module
ppf_M00539  Cumate degradation, p-cumate => 2-oxopent-4-enoate + 2-methylpropanoate
Brite
KEGG Orthology (KO) [BR:ppf00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00622 Xylene degradation
    Pput_2897
Enzymes [BR:ppf01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.12  With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor
    1.14.12.25  p-cumate 2,3-dioxygenase
     Pput_2897
SSDB
Motif
Pfam: Ring_hydroxyl_B SnoaL_4
Other DBs
NCBI-ProteinID: ABQ79027
UniProt: A5W4G7
LinkDB
Position
complement(3286070..3286612)
AA seq 180 aa
MSAVALEKEPLRIPSSQDFAAFVTRSEVEDLLYHEAELLDTWHLHDWLALFTEDCSYFVP
STDLPRTASADDSLFYIADDAVRLRERVIRLMKKTAHAEYPRSRTRHLVSNIRILAANAE
EIQVASAFVTYRMKLGNSDAYVGSTHYRLRRIDGQLRIVEKRCFLDLEALRPHGRVSIIL
NT seq 543 nt   +upstreamnt  +downstreamnt
atgagtgccgttgccctagaaaaagaacctctgcgtatcccatcgtcccaggacttcgcc
gccttcgtcacccgcagcgaagtggaggacctgctttatcacgaggctgaactgctggat
acctggcatttgcacgactggctggccctgttcaccgaggactgcagctacttcgtgccg
tcgaccgacctgccgcgcaccgccagcgccgacgacagcctgttttatatcgccgatgac
gccgtgcgcttgcgcgagcgggtgattcggctgatgaagaagacggctcacgccgagtac
ccgcgctcacggacgcgccacttggtcagcaatatccgcattctggctgccaatgccgaa
gagattcaggtggcctccgccttcgtgacctaccgcatgaagctcggcaacagtgatgcc
tatgtcggtagcacgcactatcggttgcgtcgaatcgatgggcaactgcgcatcgttgag
aagcgctgtttcctggacctcgaagcgctgcgcccgcatggccgggtcagcatcattctg
taa

KEGG   Pseudomonas putida F1: Pput_2894
Entry
Pput_2894         CDS       T00537                                 
Name
(GenBank) Rieske (2Fe-2S) domain protein
  KO
K16304  p-cumate 2,3-dioxygenase ferredoxin component
Organism
ppf  Pseudomonas putida F1
Pathway
ppf00622  Xylene degradation
ppf01100  Metabolic pathways
ppf01120  Microbial metabolism in diverse environments
ppf01220  Degradation of aromatic compounds
Module
ppf_M00539  Cumate degradation, p-cumate => 2-oxopent-4-enoate + 2-methylpropanoate
Brite
KEGG Orthology (KO) [BR:ppf00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00622 Xylene degradation
    Pput_2894
Cytochrome P450 [BR:ppf00199]
 Cytochrome P450, animal type
  CYP4 family
   Pput_2894
SSDB
Motif
Pfam: Rieske Rieske_2 Diox-like_N Rieske_4 Cytotoxic
Other DBs
NCBI-ProteinID: ABQ79024
UniProt: A5W4G4
LinkDB
Position
complement(3283976..3284332)
AA seq 118 aa
MTNIIETVDLTDLVGLCATDDVAEGEILRVKLPSGHALAIYCVNGEFFATDDICSHGEAS
LSEDGSLDGYEVECSWHFGRFDIRTGHACAMPCEHPLRSWPVTVEGGQIFVDVGAHPV
NT seq 357 nt   +upstreamnt  +downstreamnt
atgactaacatcatcgagacagttgacctgactgacctcgtgggcctgtgcgcgaccgat
gacgtagctgagggtgagattcttcgcgtcaagctgccatccggtcacgctctggcaatc
tactgcgtcaacggggagttcttcgccaccgacgacatctgctcccacggcgaggcatcc
ttgtcggaggatggttcgctcgatggctacgaggtcgagtgcagttggcacttcggacgt
ttcgacattcgtacagggcatgcctgcgcgatgccatgtgagcacccgttgcgaagctgg
ccggtcacagtcgagggtgggcagatcttcgtcgatgtgggggcgcaccctgtatga

KEGG   Pseudomonas putida F1: Pput_2899
Entry
Pput_2899         CDS       T00537                                 
Name
(GenBank) FAD-dependent pyridine nucleotide-disulfide oxidoreductase
  KO
K18227  p-cumate 2,3-dioxygenase ferredoxin reductase component [EC:1.18.1.3]
Organism
ppf  Pseudomonas putida F1
Pathway
ppf00622  Xylene degradation
ppf01100  Metabolic pathways
ppf01120  Microbial metabolism in diverse environments
ppf01220  Degradation of aromatic compounds
Module
ppf_M00539  Cumate degradation, p-cumate => 2-oxopent-4-enoate + 2-methylpropanoate
Brite
KEGG Orthology (KO) [BR:ppf00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00622 Xylene degradation
    Pput_2899
Enzymes [BR:ppf01000]
 1. Oxidoreductases
  1.18  Acting on iron-sulfur proteins as donors
   1.18.1  With NAD+ or NADP+ as acceptor
    1.18.1.3  ferredoxin---NAD+ reductase
     Pput_2899
SSDB
Motif
Pfam: Pyr_redox_2 Reductase_C Pyr_redox NAD_binding_8 Lys_Orn_oxgnase DAO Pyr_redox_3 2-Hacid_dh_C 3HCDH_N HI0933_like GIDA NAD_binding_9 TrkA_N Trp_halogenase AlaDh_PNT_C F420_oxidored Ldh_1_N XdhC_C
Other DBs
NCBI-ProteinID: ABQ79029
UniProt: A5W4G9
LinkDB
Position
complement(3287960..3289168)
AA seq 402 aa
MGEDISKIVIIGAGQAGATVAFGLRRNGFAGEITLVGEESHLPYERPQLSKEMLRPEASA
HKSIKTRADYEEQSILLELGCKVVRADAQAHSIVLDDGRQLAFDRLVIATGVQPRRLSSA
FQGAHRVHYLRTLEDAARLRADLEAGKSLAIVGGGVIGLEVAAAARALNCPVTLIEAADR
LMSRSVDEVVSAYLDRAHRRNGVDIRYGVAATELLDDGRLRLSDGGTVPAEAVLVGIGVT
PNIEGFEHLDITDATGVRVDAYSQTVVPGIFATGDIASQPNGGGFGRIETWANAQDHALN
LVKNLMGEAVPYEAPVWFWSDQGPINLQVVGDAANGRRIVRGDEHGDVFSVFRLDANQQV
IGCATVNSPKDMAVARRWVKQRSSVDPQRLADPTIPLRDCAV
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgggcgaagacatcagcaagatcgtgattatcggtgccggtcaggccggggcgacggtg
gccttcggcctgcgccgcaacggattcgccggtgaaatcaccctagtgggagaggagagc
cacttgccgtatgaaaggccgcagctatccaaggaaatgctgcggccagaggcaagcgct
cacaagtcgatcaagacacgggctgactacgaggagcagagcattctcttggagctcggt
tgcaaagtggtccgtgctgacgctcaggcgcacagcatcgtcttggatgacggtcgccag
cttgcctttgaccggctggtgatcgccacgggtgtgcagccacgccgactgtcctcggca
tttcagggtgcacatcgggtccactacctgcgcacgctcgaagatgcagcgcgcttgcgc
gccgaccttgaagcagggaagtcactagcgatcgttggcggaggcgtgattggactcgag
gttgccgctgcagcgcgtgcgctgaactgtccggtgaccctgatcgaagctgctgaccgg
ctcatgtcgcgcagcgtggacgaggtggtttccgcttatctggatcgggcgcaccggcga
aacggggtggacattcgctacggcgtggcggccaccgagttgctggacgatgggcgtctc
aggctttccgacggcggcaccgtgcccgcagaggctgtgctggtcggtatcggtgtaacg
ccgaacatcgagggctttgaacacctggatatcaccgatgccactggggtgcgggtcgat
gcgtacagccagactgtcgttcccggcatctttgccaccggcgatatcgcctcacagccc
aatggcggaggtttcgggcgcatcgagacctgggccaacgcccaggaccatgcactgaat
ctggtcaagaacctgatgggcgaagcggtgccctacgaagccccggtgtggttctggtct
gaccaaggaccgatcaacttgcaggtcgttggggacgcggctaatggccggcggattgtc
cgcggggatgagcatggagacgtcttcagcgtttttcgactcgacgccaatcagcaggtc
atcggttgcgcgacggtcaactcaccaaaagacatggctgtggcacgtcgttgggtgaag
caacgcagtagcgtcgatccgcaacggctggctgacccaaccatcccattacgcgactgt
gccgtctga

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