Pseudomonas putida GB-1: PputGB1_3838
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Entry
PputGB1_3838 CDS
T00650
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03030
DNA replication
ppg03410
Base excision repair
ppg03420
Nucleotide excision repair
ppg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PputGB1_3838
03410 Base excision repair
PputGB1_3838
03420 Nucleotide excision repair
PputGB1_3838
03430 Mismatch repair
PputGB1_3838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppg03032
]
PputGB1_3838
03400 DNA repair and recombination proteins [BR:
ppg03400
]
PputGB1_3838
Enzymes [BR:
ppg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PputGB1_3838
DNA replication proteins [BR:
ppg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PputGB1_3838
DNA repair and recombination proteins [BR:
ppg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PputGB1_3838
NER (nucleotide excision repair)
GGR (global genome repair) factors
PputGB1_3838
MMR (mismatch excision repair)
DNA ligase
PputGB1_3838
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PputGB1_3838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ABY99728
UniProt:
B0KPX3
LinkDB
All DBs
Position
complement(4276283..4278613)
Genome browser
AA seq
776 aa
AA seq
DB search
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR
VGGEALSAFSQVRHEVPMLSLGNAFEETDLREFGRRVVEGLDQPGAVDYSCKPKLDGLAV
SLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSKAGF
DRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSHIGV
LEQLKAWGMPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNNLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVEVPSACPVCGSQVERTQLVK
RSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLAFEQIVGLEGFAEVSSKKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLAR
SLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIEQLLASGMKLQDEGELA
AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLEKIIAADGIDLRQALAAKQADAVR
EFFKDEANQKLARDIEAQLLAFGMHWSCEKKVAEGLPLAGQTWVLTGTLERMSRDIAKDK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVTFLAEQGIVV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaaacccgtatccatgaactgcgtgccgaactcgaccagcacaactatcgc
tattacgtgctcgacgagcccagcgtgcccgatgccgaatacgaccgcctgttcaacgag
ctcaaggcgttggaggctgaacacccccacctggtaacccccgattcgccaacccagcgc
gtcggtggcgaggctttgtctgcgttcagccaggtacgccacgaagtgcccatgctcagc
ctgggcaacgcctttgaagaaaccgacctgcgcgaattcggccgccgcgtggttgaaggc
ctcgaccaacccggtgcggtcgactacagctgtaaacccaagctcgatggcttggccgtg
agcctgttgtaccgcgatggccagttggtgcagggcgccacccgtggcgacggtaccacc
ggcgaagacatcagtgccaacgtgcgcaccgtgcgcaacatcccgctcaaactgcagggc
gagggctggccagcagtgctggaagtgcgcggcgaggtgtatatgagcaaggccggtttc
gaccggctcaatgccgctcaggccgaagccggcggcaagaccttcgccaacccgcgcaac
gctgccgccggtagcctgcgccagctggattcgaaaatcaccgccagccgcccgctggag
ttctgctgctatggcgtcggccaggtgtccgagagcatcggcgacagccatatcggtgtc
ctcgaacagctcaaggcctggggcatgccgatcagtcgcgagctcaggcatgcggcgggt
atcgaagaatgcctggcctattaccgcgacattggcgagcggcgtaacagcctgccgtat
gagatcgacggtgtggtattcaaggttaacaacctggctgcccagcgcgaactgggcttc
cgcgcccgagagccacgctgggcgattgcccacaaattcccagccatggaagagctgacc
gaggtgctggacgtcgagttccaggttggccgtaccggtgcggtaacgcctgtggcacgc
ctgaagccggtcaaggtggccggggtaaccgtgtccaacgccaccctgcacaacatggac
gaaatcgctcggctgggcttgcgcattggcgatacggtgatcatccgccgtgccggtgac
gtgatcccgcaggtgatgcaggtggtgctggagcgtcgccccgacgatgcccgtccggta
gaagtgccaagcgcatgcccggtgtgtggctcgcaagtcgagcgtacccaactggtaaag
cgcagcaagggcaaggaaaccaccagcgaaggcgcggtgtaccgctgcgttggtcgcctg
gcctgtggcgcccagctcaagcaggcgatcattcactatgtgtcgcgccgggccatggac
atcgacggcctgggcgagaagagtgtcgagcagttggtggacgaaggcctgatcggctcg
ccggctgatctgtacaaactggcgttcgagcagatcgttggccttgaaggcttcgccgag
gtgtccagcaagaagttgctcgatgccattgaggccagcaagcgcccgagcctggcgcgg
ttcatctacgcgttgggcattcccgacgtaggcgaagagaccgccaaggtgctggcccgc
tcgctgggcagcttggcgcgtgtgcagcaggcactgccgcaagtgctgacctacttgccg
gatatcggcctggaggtggcctacgaaatccataatttcttcgaagacgagcacaaccag
aaggtcattgaacaacttctggccagtggcatgaaattgcaggacgaaggcgaactggct
gccgagttcgccgccagtactaccttggctgggatgattgccaagctcgacatcgcctcg
gtcggcccgaccggtgccgagaagctggtggccaagctcgacagcctggagaagatcatc
gccgccgacggcatcgacctgcgccaggccctggcggccaagcaggctgatgctgtgcgt
gagttcttcaaggatgaagcgaaccagaaactggcgcgggacatcgaagcgcagttgctg
gcgttcggcatgcactggagctgcgagaagaaggttgccgaaggcttgccgctggcaggc
cagacctgggtgctgaccggcacgctggaacgcatgagccgcgatattgccaaggacaag
ctggaaagcctgggggccaaggtggcgggttcggtttctggcaagacccattgcgtggtg
gcagggccgggggcgggctccaagctggccaaggccagcgagctgggcgtgaaggtgctg
gatgaagatgcattcgtcacattcctggccgagcagggcattgttgtttag
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