Pelodictyon phaeoclathratiforme: Ppha_0483
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Entry
Ppha_0483 CDS
T00731
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pph
Pelodictyon phaeoclathratiforme
Pathway
pph03030
DNA replication
pph03410
Base excision repair
pph03420
Nucleotide excision repair
pph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ppha_0483
03410 Base excision repair
Ppha_0483
03420 Nucleotide excision repair
Ppha_0483
03430 Mismatch repair
Ppha_0483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pph03032
]
Ppha_0483
03400 DNA repair and recombination proteins [BR:
pph03400
]
Ppha_0483
Enzymes [BR:
pph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ppha_0483
DNA replication proteins [BR:
pph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ppha_0483
DNA repair and recombination proteins [BR:
pph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ppha_0483
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ppha_0483
MMR (mismatch excision repair)
DNA ligase
Ppha_0483
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ppha_0483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
Auto_anti-p27
BRCT_2
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
ACF42809
UniProt:
B4SCX5
LinkDB
All DBs
Position
472750..474774
Genome browser
AA seq
674 aa
AA seq
DB search
MTDIIRAAEAIAQLRREIERHTHLYYVEAKPELSDFEFDQLLDQLITLERQFPQLLTPDS
PSQRVGGAITREFPAVQHREPMLSLSNSYSITEVEEFYNRVRKLLALEGVVEQEMVAELK
FDGVAISLIYQDGILVRGATRGDGRQGDDITANLKTVATIPLRLEETLVAALQGEERAIE
VRGEVFMRKEDFERLNESRPDEDRFANPRNATAGSLKLQDSGEVARRSMSFVAYYLKGLK
DESTPHIHRLELLARLGFFTGDHYRLCNTLEEINTYIAEWAEKRWQLPYETDGVVLKLND
VPFREKLGATAKSPRWAIAYKYPAQQARSVLQNVLFQVGRLGTITPVAELEPVLLAGSTV
SRSTLHNFDEIERLGLMLRDRVIIEKSGEVIPKVVRTLFEERPADAMPILPPTHCPSCGA
PLVRPENEVSYSCPNEEECPAQIKGRLLHFASRNAMDIQTLGDALVEQLVAKGLVKDPGD
LYFLQEPQLEKLERMGPKSAQNILRALEKSREKSYERLLYALGIRHVGRATARELSQACP
SIDLLREASEEQLATIPDIGPVVARSIIDYFAKPSWPHLLEKLRTAALQLSASEPKEQVN
RNFEGVTVLFTGSLERYDRQKASELVLERGGRVVGSVSKKTGMVVAGQDPGSKLQKANKL
GVRVVSEDEFEAML
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatatcattcgtgccgcagaggcgattgcacagcttcgccgggagatcgagcgg
cacacccatctctactatgttgaggcaaagccggagctctccgattttgaatttgaccag
cttctcgatcaactcatcacccttgagcggcaattcccgcaactgcttacccccgacagc
ccctcgcagcgggtgggaggagccattaccagggaatttcctgcagtgcagcatcgtgag
ccgatgctcagcctctcaaacagctactccatcaccgaggtggaggagttttacaaccgc
gtccgaaaactcctcgccctcgaaggggttgtggagcaggagatggttgccgagctgaaa
tttgacggtgttgccatcagcctcatctaccaagacggcattctcgtacgcggcgcaaca
cggggtgacggtcggcagggtgatgatatcacggctaatctgaagaccgttgccaccatt
cccctccgactggaggagactcttgtcgcagctcttcagggggaggagagagcgatcgag
gtgcgcggcgaagtcttcatgcgcaaggaggattttgaacgtctcaacgagagccgtccc
gatgaagatcgatttgccaacccccgcaatgccacggcaggctcactcaaactgcaggat
tccggtgaagtggcccgtcgcagcatgagttttgttgcctactacctgaaagggctcaag
gatgaatccacaccccacatccatcgtctcgaactgctcgcccgtctcggcttctttacc
ggcgaccactaccggctctgcaataccctcgaggagatcaacacctatattgccgaatgg
gcagaaaagcgctggcagctcccctacgagaccgacggagtggtgctcaaactcaacgat
gtccctttccgcgaaaaacttggcgcaaccgcaaaaagcccacgctgggccatagcctac
aaatatccggcacaacaggccagatcggtgctccaaaacgtgctcttccaggtaggacgg
ctcggcaccatcacccctgttgccgaacttgagcccgtcctgcttgccggttcaaccgtc
tcccgctccaccctccataacttcgacgaaatcgagcgccttgggctcatgctccgcgac
cgggtcatcatcgaaaaatcaggcgaggtcattcccaaagtggtgcgcaccctcttcgaa
gagcgccccgccgatgccatgcccattctgccgcctacccattgcccctcatgcggcgcc
ccgctcgtccgaccggagaacgaagtcagttactcctgcccgaacgaagaggagtgcccg
gcccaaataaaagggcggctgctgcactttgcatcgcgcaatgccatggatatccagacc
ctcggcgacgccctcgtcgagcagcttgtagccaaagggcttgtcaaagatcccggcgac
ctctactttcttcaggaaccacagctcgaaaagcttgaacgcatggggccaaaatcggca
caaaacatcctgcgcgctttggagaaaagtcgggaaaaaagctatgaacgactcctctac
gctctcggtatccgtcacgtcggacgcgccaccgcccgtgaactctcgcaagcctgcccc
tccatcgatcttctccgggaggccagcgaggagcagcttgccaccatccccgatatcggc
ccggttgtcgcccgcagcatcatcgactactttgcaaaaccatcatggccacacctcctt
gaaaaactccgcacggcagcgctgcaactcagtgcatcggagcccaaagagcaggtcaac
cgcaatttcgagggagtcacagtactctttaccggcagccttgaacgctacgaccgccag
aaagcctcggaactggtgcttgaacgcggcggcagggtagtcggctccgtcagcaaaaag
accggcatggttgttgctggccaagaccccggcagcaagctgcagaaagccaacaagctc
ggagtcagggttgtgtcggaagatgaatttgaagccatgctgtaa
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