KEGG   Phocoena phocoena (harbor porpoise): 136128769
Entry
136128769         CDS       T11058                                 
Name
(RefSeq) HLA class II histocompatibility antigen, DO beta chain isoform X1
  KO
K06752  MHC class II antigen
Organism
pphc  Phocoena phocoena (harbor porpoise)
Pathway
pphc04145  Phagosome
pphc04514  Cell adhesion molecules
pphc04612  Antigen processing and presentation
pphc04640  Hematopoietic cell lineage
pphc04658  Th1 and Th2 cell differentiation
pphc04659  Th17 cell differentiation
pphc04672  Intestinal immune network for IgA production
pphc04940  Type I diabetes mellitus
pphc05140  Leishmaniasis
pphc05145  Toxoplasmosis
pphc05150  Staphylococcus aureus infection
pphc05152  Tuberculosis
pphc05164  Influenza A
pphc05166  Human T-cell leukemia virus 1 infection
pphc05168  Herpes simplex virus 1 infection
pphc05169  Epstein-Barr virus infection
pphc05310  Asthma
pphc05320  Autoimmune thyroid disease
pphc05321  Inflammatory bowel disease
pphc05322  Systemic lupus erythematosus
pphc05323  Rheumatoid arthritis
pphc05330  Allograft rejection
pphc05332  Graft-versus-host disease
pphc05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:pphc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    136128769
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    136128769
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    136128769
   04612 Antigen processing and presentation
    136128769
   04658 Th1 and Th2 cell differentiation
    136128769
   04659 Th17 cell differentiation
    136128769
   04672 Intestinal immune network for IgA production
    136128769
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    136128769
   05164 Influenza A
    136128769
   05168 Herpes simplex virus 1 infection
    136128769
   05169 Epstein-Barr virus infection
    136128769
  09171 Infectious disease: bacterial
   05150 Staphylococcus aureus infection
    136128769
   05152 Tuberculosis
    136128769
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    136128769
   05140 Leishmaniasis
    136128769
  09163 Immune disease
   05310 Asthma
    136128769
   05322 Systemic lupus erythematosus
    136128769
   05323 Rheumatoid arthritis
    136128769
   05320 Autoimmune thyroid disease
    136128769
   05321 Inflammatory bowel disease
    136128769
   05330 Allograft rejection
    136128769
   05332 Graft-versus-host disease
    136128769
  09166 Cardiovascular disease
   05416 Viral myocarditis
    136128769
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    136128769
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pphc04147]
    136128769
Exosome [BR:pphc04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   136128769
  Exosomal proteins of epithelial cells
   136128769
  Exosomal proteins of breast milk
   136128769
SSDB
Motif
Pfam: MHC_II_beta C1-set Ig_3 ig C2-set_2 Ig_2 DUF3040 DUF7550
Other DBs
NCBI-GeneID: 136128769
NCBI-ProteinID: XP_065740706
LinkDB
Position
10:complement(64161533..64176339)
AA seq 273 aa
MGSSWVPWVVALLVTVIRLDSSMTQGRDAPEDFVIQAKADCYFTNGTENVHFVVRFIFNL
EEYARFDSNLGMFVALTELGQPDAELWNNRPDILARSRASVDALCRRNYKLGAPFTVGRK
VQPEVTVYPERIPALQHHNRLLCSVTGFYPGDIKITWFRNGQEQREGVMSTGLIRNGDWT
FQTMVMLAMTPELGEVYTCLVDHPSLLSPVSVEWRAQSEYSWRKMLSGIAAFLVGLVFLL
VGIVIHTRARKGRVETLLSGAEVPRAVLHPQPH
NT seq 822 nt   +upstreamnt  +downstreamnt
atgggttctagctgggttccctgggtggtggctttgttagtgacggtaatcaggctggat
tcctccatgactcaaggcagagatgctccagaagattttgtgattcaggcaaaggctgac
tgttacttcaccaatgggacagaaaatgtgcattttgtggtcagattcatctttaacctg
gaggagtatgcacgttttgacagcaacttggggatgtttgtggccttgacggagctgggc
cagcctgacgctgagctgtggaacaatcggcccgatatactggcaaggagtagagcctct
gtggatgcgctctgcagacgcaactacaagctgggtgcacccttcactgtggggagaaaa
gtgcaaccagaggtgactgtgtatccagagaggatcccagccttgcagcaccacaatcgg
ctgctttgctctgtgacaggtttctatccaggggacatcaagatcacgtggttccggaat
gggcaggaacagagagagggggtcatgtccactggcctcattaggaatggagactggacc
tttcagacaatggtgatgctggcaatgactcctgaactcggagaggtctacacctgcctt
gttgatcatcccagcctgctgagccctgtttctgtggagtggagagctcagtctgaatat
tcttggagaaagatgctgagtggaattgcagccttcctggttgggctagtcttccttctg
gtggggatcgtcatccacaccagggctcggaaaggacgtgtggagactctgttgtctggt
gctgaggtcccaagagcagttcttcatccacagccacattaa

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