Phocoena phocoena (harbor porpoise): 136132683
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Entry
136132683 CDS
T11058
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pphc03036
]
136132683 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136132683 (SMCHD1)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
136132683 (SMCHD1)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
136132683 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_8th
Ig_SMCHD1_7th
Ig_SMCHD1_6th
Ig_SMCHD1_2nd
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
Motif
Other DBs
NCBI-GeneID:
136132683
NCBI-ProteinID:
XP_065745647
LinkDB
All DBs
Position
13:55225347..55354422
Genome browser
AA seq
2000 aa
AA seq
DB search
MAAADDGGPSVGTGEGDGGDGGDGYRTVYLFDRREKESELGDRALQVTERSDFAAFRASV
CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVSQLLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRRIQIKLHFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
DDERFLHHLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGN
EKRTSKEVGPFNNIDIEISVFEKGKTPKIINLREIQDDMQTLYINTAADSFEFKAHVEGD
GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYS
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDE
IKTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPNGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFLCGLLDLPFRVGVP
FNIPLQFQDEFGHTSQLSTDIQPVFEASGLSLHYEEITNGPNCVIRGVTAKGPVNSCQGK
NFNLKVIFPGLKEDSQFLKITLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNI
TAQPKLIVHCKFSGAPNLPLYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKD
VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE
IHLTSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
VRPLPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSSLGIAGIG
LDSSHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLV
DWPELKESIPVINGRELQNPLVVQLCDQWDNPALVPQVKISLIKANNLKLTPSNQQHKTD
ERGRANLGVFSVYAPRGEHIMQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDAS
FLAGGIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAEIFSCNKIKDND
KEDGCFYFRDKAIPNKVGPYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPEIQPATP
AVSNVRSVASRTLVKDLYLRITDDYNNHTGIDSVGTVTATIKGSNEEDDTPLFIGKVRTL
EFPFVKGSAEITSLVLAENSPGRDSTEYFIVFEPQLPGLSRTLESYILPFMFYNDVKKQQ
QMAALTKEKDQLSKSIIMYRSLFDASKQLLDEMKCQVEEAKLKEAQLRNELKTHNIDIPT
TQQMPHIEALLKKKISEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVI
SWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRALPHYRNGKLYF
KPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLT
RDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRTAVCRLGS
VNKDLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSPRHPMTDCPVP
PKRMRREVTRQNRIITKTDV
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacgacggcgggccctcggtggggaccggagagggcgacggaggcgac
ggcggcgacggctacaggacggtgtacttgtttgaccggcgcgagaaggagtcggagctc
ggggaccgggcgctgcaggtcacggagcgctcggactttgcggcgttccgtgcttcagtg
tgtcagacacttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaa
gaaattacctgtgataattttgatgagactgttaaagatggagtcactctgtacctgcta
cagtcagtcagtcagttactactaacagctacaaaagaacgaattgacttcctacctcac
tatgacacattggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcct
ttaccatttgctcttgcagaattaattgataattcattgtctgccacgtctcgtaacact
ggtgttagaagaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgtt
gcagtgatagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtat
aggttgtcaaaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcga
ccactaccagtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaag
caggctgttttctttgttggacaatcagccagaatgataagcaaacctgcagattcccag
gatgttcatgaacttgtactttctaaagaagattttgagaagaaggagaaaaataaagag
gcaatatatagcggatatattagaaacagaaagccgtctgattctgttcacattacaaat
gatgatgaaagatttctacatcatcttatctcagaggagaaggaaaaagatagctttact
gctgtggttatcacaggggtacaaccagaacacatacagtacttgaaaaattatttcctt
ctttggacgagacagttagcgcatatttatcattactatattcatggcccaaaagggaat
gaaaaacgtacatcaaaggaagttggacctttcaacaacattgatattgaaatttctgtg
tttgaaaaggggaagacacctaagattatcaacctaagggaaatacaagatgacatgcag
acgttgtatataaatacagcagccgatagttttgagttcaaggctcatgttgaaggagat
ggtgtagtggaagggattatccgatatcacccttttttatatgatagagaaacgtatcct
gatgatccatgctttccatcaaaattaaaagatgaagatgatgatgatgactgtttcata
cttgagaaagcagcaagagggaaaagacctatttttgaatgtttttggaatggacgacta
ataccatatacatctgttgaagactttgactggtgtactcctcctaagaagagagggctt
gcaccgattgagtgctacaataggatatctggtgcattattcactaatgacaaattccag
gtcagcacaaataaactgacctttatggatcttgagctaaaattgaaagataagaacacc
ctttttacaaggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgct
ttatggctgaaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaa
ggaataattacacgtcctgatcttccttctaaaaagcagggcccctgggcgacttattca
gcaatagaatgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagaca
cttcctctcttttatggaagcattgtaaaattttttctttatggtgatcatgatggagaa
gtatatgctacaggaggagaggttcaaattgcaatggaacctcaggcactgtatgatgaa
ataaaaactgtgccaattgcaaagctggataggacagttgctgagaaagctgtgaaaaaa
tatgtagaagatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaagga
gatgaattattgccaaatgagattaggcctgctggaacccccattggtgcattaagaatt
gaaatattgaataaaaagggggaagcaatgcaaaagcttccaggaacaagtcatggaggg
tcaaagaaactcctggttgagctcaaagttatactacactctccaaatggaaataaagaa
atcatttcacatattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aatattcaaaagttggggaattatacattgaaattacaagttgtactgaatgaaagtaat
gcagacacttatgcaggaagaccactaccatctaaagcaattaaattttctgtcaaagag
ggtaaaccagagaaatttttatgtggtcttttggatcttccttttcgtgttggagtccca
ttcaatatccctctgcagtttcaggatgaatttggtcatactagtcaactatcaactgat
attcagccagtttttgaagcaagtggtttatctttacattatgaagaaataaccaatggc
ccaaattgtgtcattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaag
aattttaatctgaaggttatttttccgggtttaaaagaagactcacagtttctgaaaatt
accttactgccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagtt
atagaaaatggaacagctttcccatttcaggtagaagttttggatgaatcagacaatata
acagcacaaccaaaattgattgttcattgtaagttttcaggtgctccaaaccttccactc
tatgttgtggattgcagtagttctggaaccagtattttgtcaggaccagcaattcaagtt
cagaatatcaaaaaagaccagacgcttaaagcaaaaattgaaatacctagttgtaaagat
gtggcacctgtggagaagactattaagttgcttcccagtagccatgttgcaagattacag
atattcagtgtagaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattgg
atagcaggagatattatgcataaccttatttttcaaatgtatgatgaaggagaaagagaa
atccacttaacatcagctttagcagagaaaattaaagttaactggactcctgagattaac
aaagagcacttactacagggtctgcttcctgatgtacaagtaccaacatctgtaaaagat
atgcgctattgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttaca
gtaagaccacttcctgatgaacctaaacatctaaaatgtgaattaaaaggaggaaaaact
gtacagatgggccaagagcttcaaggagaaatagttataatagttacagatcagtatgga
aatcagattcaagcattttcaccaagttctctatcttccttgggaattgctgggattgga
cttgatagctcacatttgaaaactacttttcaggaaaatacacaaagtataagtgtgaga
ggcatcaaatttattccaggtccccctggaaataaggatctttgttttacgtggcgtgag
ttttctgactttattcgagtgcagctgatttctgggccaccagctaaacttctccttgta
gactggccagagttaaaggagtccattccagtgattaacggaagagaattacagaatcct
ctcgttgttcaactttgtgatcagtgggataatccagcacttgtgccacaggttaaaata
agccttataaaagctaacaatttaaagctcactccttcaaaccaacagcataaaaccgat
gaaaggggcagggctaatttgggagtgttcagtgtttatgcccctagaggagaacatatt
atgcaggttaaagccatttataacaagaataccatagaaggacctataattaagttaatg
attcttccagaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcc
tttttagcagggggtattttcactgattttatgattactgttatttctgaagatgacagt
atcattaaaaatattaatccagcacgtatttccatgaaaatgtggaaactgtcaaacagt
gggaaccgaccaccagcaaatgcagaaatatttagttgtaataaaataaaggataatgac
aaggaagatggctgcttctacttcagggataaagcaattcctaacaaagtggggccatat
tgtatccagtttggttttatgatggataaagcaaatatccttaacagtgagcagattata
gtggatgttctacctaatcaacctgtgaagttagttcctgaaattcagcctgctacacca
gctgtttcaaatgttcgctcagttgccagtaggaccttggtcaaagatttatatcttcgt
atcacggatgactacaacaatcatactggaattgattcggttggcactgtaacggctacc
atcaaaggctctaatgaggaagatgacaccccactctttattgggaaagttagaacactt
gaatttccctttgtgaaaggttcagctgaaatcacgagtctagttctggcagaaaatagt
cctggaagggatagcactgagtattttattgtgtttgagcctcagctaccaggtttatca
agaacattagaatcatatatcctaccatttatgttttacaatgatgttaagaagcaacaa
caaatggcagcacttacaaaagaaaaggaccaattatctaagtctattataatgtataga
agtttatttgatgccagcaaacagcttcttgatgagatgaagtgccaagttgaagaagca
aaattaaaagaggcccagttgcgaaatgaactaaaaacacacaatattgacattcctaca
acacaacagatgccacacattgaagcacttttgaagaaaaagatatcagaacaggaagaa
ctaaagaaaaaacccagaagatcatgtactcttccaaactatactaaaggcagtggagac
gttttaggaaagattgcgcacctggcacaaattgaagatgatagagccgcaatggttatt
tcttggcatctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgcacgt
cgtatctatgacgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataag
aagactcttccagattggaaaagagctctgcctcattaccgaaatggaaaattgtatttt
aaacccattggagatcctgtctttgcccgagatttgttaacgtttccagataatgtagaa
cattgtgaaacagtgtttggtatgctgttaggagacaccattattttggataatttggat
gctgctaatcattatagaaaagaggttgttaaaattacacattgtcctacactgctgacc
agagatggagatcgcattcgaagtaatggaaagtttgggggccttcagaataaagctcct
ccaatggataaacttcggggaatggtctttggagctccagtaccaaaacagtgcctgatc
ttaggggaacaaatagatcttcttcagcagtaccgcactgctgtgtgcaggttgggcagt
gtgaacaaggaccttaacgggcagttggaataccttcacactccagatatgaagaagaaa
aaacaggaacttgatgaacaagagaagaatctcaaactgatagagcaaaaactaggtatg
actcccacacgtaagtgtaatgactcaccgcgtcatccaatgacagactgtccagttcct
cctaagagaatgagaagagaagttacaagacaaaataggattataaccaaaacagatgtg
tga
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