Phocoena phocoena (harbor porpoise): 136136178
Help
Entry
136136178 CDS
T11058
Symbol
PCDH15
Name
(RefSeq) protocadherin-15 isoform X1
KO
K16500
protocadherin-15
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
136136178 (PCDH15)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pphc03037
]
136136178 (PCDH15)
04515 Cell adhesion molecules [BR:
pphc04515
]
136136178 (PCDH15)
Cilium and associated proteins [BR:
pphc03037
]
Primary cilia and associated proteins
USH complex and associated proteins
136136178 (PCDH15)
Cell adhesion molecules [BR:
pphc04515
]
Cadherins
Protocadherins
136136178 (PCDH15)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Ig_Cad99C_N
Ig_CLSTN
Cadherin_FAT4_N
Cadherin_CELSR2_9th
CDH23_a-b
PRIMA1
CR_prot_dom_plant
Motif
Other DBs
NCBI-GeneID:
136136178
NCBI-ProteinID:
XP_065750244
LinkDB
All DBs
Position
16:complement(40901659..41616194)
Genome browser
AA seq
1793 aa
AA seq
DB search
MFQQFYLWKWLASGITFCCLFTVCLGQYDDDWQYEDCKLARGGPPATIVAIDEESRNGTV
LVDNMLIKGTAGGPEPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIV
VQVQCINKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFSGDNG
ATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYFVIIQAN
DRAQNLNERRTTTTTLTVDVLDGDDLGPMFLPCVLVPNTRDCHPLTYQAAIPELMTPEEL
NPIIVTPPIEAIDQDRNIQPPSDRPGILYSILVGTPEDYPRFFHMHPRTAELSLLEPVNR
DFHQKFDLVIKAEQDNGHPLPAFASLHIEILDVNNQSPYFTMPSYQGYILESAPVGATIS
DSVNLTTPLRIVVLDKDVEDVPPGGVPTKDPELHLFLNDYTSVFTVTQTGITRYLTLLQP
VDREEQQTYIFSITAFDGVQESEPVTVNIRVMDANDNTPTFPEISYDVYVYTDMNPGDSV
IQLTAVDADEGSNGEITYEILVGAQGDFVIDKTTGLITIAPGVELIVGRTYALTIQAADN
APPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEMSEAMRVGAVLLNLQATDREGDPI
TYAIENGDPQRVFNLSETTGILTLGKALDRESTDRYILIVTANDGRPDGTSTATVNVVVT
DVNDNDPVFDPYLLRNLSVVEEEANAFVGRVWATDADAGINGQVYYSLGNFNNLFRITSN
GSIYTSVKLNREVRDYYELVVVATDGAVHPRYSTLTVAIRVLDIDDNSPVFTNSTYTVVV
EENLPAGTSFLQVEAKDVDLGANVSYRIRSPEVKHIFALHPFTGELSLLRSLDYEAFPDQ
EASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPVFSKRIYKGIVAPDAAKGTPITTV
YAEDADPPGLPASRVRYRVDDVQFPYPASIFDVEEDSGIVITRVNLNEEPTTIFKLVVVA
FDDGEPVMSSSATVKILVLHPGEIPRFTQEEYRPPPVSELATRGTMVGVISAAAINQSIV
YSIVAGNEEDKFGINNITGVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNRA
KVYIEIQDENDHPPVFQKKLYIGGVSEDARMFASVLRVKATDKDTGNYSAMAYRLIIPPV
KEGKEGFVVETYTGLIKTAMLFHNMRRSYFKFQVIATDDYGKGLSGKADVLVSVVNQLDM
QVIVSNVPPTIVERKIEELTEILDRYVQEQIPGAKVVVENVGARRHGDAFSLEDYTKCDL
TVYAIDPQTNRAIDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGE
SLGYTEGALLALAFIIILCCIPAILVVLVSYRQFKVRQAECTKTARLQATVPAVKPAAPA
PAPVAAPPPPPPPPPPPPPPGAHLYEEVGDSTMHKYEMPQYGSRSRLLPPTGQEEYGEVV
GEAQEEYEEEEEKAKKVKPKVEIREPSEEEEVVVTIEKPPAAEPTYTTWKSARIFPMIFK
KVRGLAERRGIIDLEDEEWQRRLEAEDKDYLKLTLDQEEATESTVESEEESSSDYTEYSE
EESEFSESETTEESETETPSEEEESSTPGSEESESTESEGEKARKNIFLARRRPIAEEVQ
KVKDRKEELPEEPEERNVEEEEERPAEEQESELTPVEEPTDLESQDITEEGSAESASVEG
SVESEEESESSSSSSESQSGGPWGFQVPEYDPSKQANEKKPPGASSEGYNTAL
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgttccaacagttttatctctggaaatggttagcttcagggattaccttttgctgtctc
ttcacagtctgcttgggccaatatgatgatgactggcaatatgaggattgcaaactagct
agggggggaccaccagccaccatagttgccattgatgaagagagtcggaatggtactgtt
ctggtggataacatgctgatcaaagggactgctggaggaccagagccaaccatagaactc
tctttaaaggacaacgtggattactgggtattgctggatcctgttaaacaaatgcttttc
ctgaacagcacgggcagagttctggatagagatcctccaatgaacatacactccatcgtg
gtacaggttcagtgcatcaacaaaaaagtgggtactgttatctaccatgaagttcgaatc
gtggtgagagacagaaatgacaactcacccacattcaagcatgaaagctactacgccaca
gtgaatgagcttactccagttggcaccacagtatttacaggattttcaggagacaatgga
gctacagacatagatgatggcccaaatggacagatagaatatgttattcaatataatcca
gatgatccgacatccaatgacacctttgaaatcccccttatgttgaccggaaatgtagtg
ttaaggaagaggctcaactatgaagacaagactcgctactttgtcatcatccaagctaat
gaccgtgcacaaaacctgaatgaacggcgaaccactaccaccaccctcacagtggatgtt
ctagatggagatgacctgggtccaatgtttcttccttgtgtccttgtgccaaacactcgt
gattgtcacccactcacctatcaagctgccatacctgagttgatgactccggaagaattg
aaccccatcattgttaccccaccgattgaagccattgatcaggaccggaatattcagccg
ccatcagataggccaggcatcctctattccatccttgttgggactcctgaggattaccca
cgattttttcatatgcatccaaggactgcagaacttagtctcctggagccagtaaataga
gactttcaccagaagtttgatttggttattaaggctgaacaggacaatggtcatcctctt
cctgcttttgccagtctgcatattgaaatactggatgtaaacaatcagagcccatatttc
acaatgcccagttatcaaggctatattctggaatctgccccagtgggagcaactatttct
gacagtgtgaatttgaccacccctctaagaattgtagttctggacaaggatgtagaagat
gttccacctggtggagttcctacgaaagacccagagcttcacctttttctgaatgattat
acttcagtcttcactgtcacgcagactggaatcactcgctacctcaccttacttcaacca
gtggacagggaagaacagcaaacttacatcttttcgataacggcatttgatggtgttcaa
gaaagtgaaccagttactgtcaatattcgggtgatggatgcaaacgataacactccaacc
ttccctgaaatatcctatgatgtctatgtttatacagatatgaaccctggggacagtgtc
atacagctcactgcagtcgacgcagacgaagggtcaaacggggagatcacatatgaaata
ctggttggggctcagggagacttcgtcatcgataaaacaacagggcttatcaccatcgct
ccgggggtggaattgatagttgggcggacttacgcactcaccatccaagcagcggataat
gctcctccagcagagagaaggcactccatctgcactgtgtacattgaagtgcttcctcca
aataatcaaagccctcctcgcttcccacagctgatgtatagccttgaaatgagtgaggcc
atgagggttggcgctgttttattaaatctacaggcaactgatcgagagggagatccaata
acatacgccattgagaatggagatccacagcgagtttttaatctttcagaaactactggg
attctaaccttagggaaagcactggacagggaaagcactgatcgctacattctgatcgtc
actgctaatgatggcaggccagatgggacctcaactgccactgtaaatgtggtggtgaca
gatgtcaatgacaatgatccagtgtttgatccctatctgctcagaaatctgtcagtggtg
gaagaagaagccaatgcgtttgtgggtcgagtatgggcaacagacgctgatgctggaata
aatggccaagtatactacagtttgggtaacttcaataatctttttcgtatcacatccaat
gggagcatttacacatcagtgaagcttaacagagaagtcagggactactatgaacttgtt
gttgtggcaactgatggagcggtacaccctcgttattcaactctaacagtggccatcagg
gttttggatattgatgataatagtcctgtgttcaccaattcaacatatactgtcgtcgtt
gaagaaaatctgccagccgggaccagtttccttcaagtagaggccaaagatgttgacctc
ggagctaatgtatcttatcggataagaagtccggaagtgaagcacatttttgcactacat
ccatttacaggagagctctcccttttaaggagtttggactatgaggcatttccagaccag
gaagcaagtatcacttttctagtggaggcctttgatatttatggaacaatgccacctggt
attgctactgtcacagtgatagtaaaggatatgaatgattatcctccagtatttagtaaa
cggatctacaaagggatagtggctccagatgccgccaagggtacacctatcacaaccgtt
tatgctgaagatgcagaccctcctggattacctgcaagtcgtgtgagatatagagtagat
gatgtccagtttccttatcctgccagtatttttgatgtagaagaagattctggaatagta
ataactcgagttaatcttaatgaagaacctacaacaatttttaagttggtggttgttgct
tttgatgatggtgagcctgtgatgtccagcagtgccactgtgaaaattcttgtcttacat
cctggagaaatcccacgcttcacacaagaggaatacagaccgcctccagtaagtgaactt
gcaaccagagggactatggttggtgtaatttctgctgcagccatcaatcagagtattgtg
tactccattgttgcaggaaatgaagaggataagtttggaattaataacatcacgggtgta
atctatgtgaatggccctctggattatgagacaaggacaagctatgtacttcgagtccaa
gctgattccctggaagtagtcctcgccaacctacgtgttccttcaaaaagcaatagagct
aaagtgtatattgagattcaggatgaaaatgatcatcccccagtgtttcagaaaaaactc
tacattggaggtgtatctgaagatgcaagaatgtttgcttctgtgctcagagttaaggct
actgataaagataccggcaattatagtgccatggcatacagactcataataccaccagtt
aaagagggaaaagaaggattcgtggtggaaacatacacagggcttattaaaacggctatg
ctcttccataatatgaggaggtcttacttcaagtttcaagtcattgcaactgacgactat
gggaagggcctaagtggcaaagcagatgttcttgtctctgtggtcaatcagctggatatg
caagtcattgtttctaatgtaccccctactatagtggaaagaaagatagaagaacttaca
gagattttggatcgctatgttcaggagcaaattcctggtgccaaggttgtggtagagaac
gttggagctcgccggcatggcgatgccttttctctagaagattacacaaagtgtgacttg
actgtctatgcaatcgacccccaaaccaacagagccatcgacagaaatgagctttttaaa
tttttagatggcaaactcctcgatatcaataaagactttcagccgtattacggggaagga
ggacgcattctggagatccggactccagaggcagtaaccagcattaagaagcgaggagaa
agtctaggctacacagaaggggccttgctggctctggccttcatcatcatcctctgctgt
attcctgccatcttggtggttttggtcagctacagacagtttaaagtgcgccaagctgag
tgcaccaagacagcccgactccaagccaccgtacctgcagtgaaacctgcagcgcctgcc
cctgcaccagtggccgcgcccccgccgcccccgccgcccccgccgcccccgccgcctcca
ggggcgcatctctatgaagaagtgggggacagcacgatgcataagtatgaaatgcctcaa
tatggaagtcgcagtcgtttgttaccaccaactggacaagaggaatatggtgaggtggtt
ggcgaagctcaggaggaatatgaagaggaagaggaaaaggcaaagaaagttaaaccaaaa
gttgaaattagagagcctagtgaggaggaagaagtagttgtcactattgaaaagccacca
gcagctgagccaacatatacgacgtggaagagtgccaggatattccccatgatttttaag
aaagttagaggactagctgaaagaagaggcatcattgaccttgaagatgaagagtggcag
agacgccttgaggcagaagataaagattatttgaaactaacactggaccaagaggaagct
acagaaagcacggtagagtcagaggaggaatcctcaagtgactatactgaatacagtgaa
gaggaatccgagttcagtgagtctgagacgacagaagagtctgagacagagacaccctct
gaggaggaagaaagttctacccctggatcagaagaatcggaatccacggagtcagaagga
gaaaaggcaaggaagaacatttttcttgcaagaagaaggcccattgctgaagaggtccag
aaagtcaaagatagaaaagaggagctacctgaagagccagaagaacggaacgtggaagaa
gaggaggaacgcccggcagaagaacaggaaagtgagctgacccctgtggaagagcccacg
gacctcgaatctcaagacatcactgaggagggcagtgcagaatcagcttcagtggaagga
agtgtggaaagtgaggaggagtcagaatcgagtagcagtagtagtgaaagtcagtctgga
ggtccttggggctttcaggtgccagagtatgacccaagcaagcaggcaaatgaaaagaag
cctccaggagcaagctcagaaggttacaacacagcactttaa
DBGET
integrated database retrieval system
