KEGG   Phocoena phocoena (harbor porpoise): 136136266
Entry
136136266         CDS       T11058                                 
Symbol
SMNDC1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
pphc  Phocoena phocoena (harbor porpoise)
Pathway
pphc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pphc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    136136266 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pphc03041]
    136136266 (SMNDC1)
Spliceosome [BR:pphc03041]
 Complex A
  U2 snRNP components
   U2 related factors
    136136266 (SMNDC1)
 Complex B
    136136266 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    136136266 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR TraX-like
Other DBs
NCBI-GeneID: 136136266
NCBI-ProteinID: XP_065750406
LinkDB
Position
16:19503007..19513193
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDNFASTQPTHSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaggatctagcaaagcaactggcaagctacaaagctcaactccagcaagttgaa
gctgcgctgtctggaaatggagaaaacgaagatttgctaaaattaaagaaagatttgcaa
gaagttatagaactaaccaaagaccttctgtcaactcaaccttctgaaacgctggcaagt
tcagacaattttgcttctactcagcccactcattcatggaaagtaggagacaagtgtatg
gcaatctggagtgaagatggacagtgttatgaagcggagattgaggagatagatgaagaa
aacggcaccgctgcaatcacttttgctggctatggcaatgctgaagtgactccactgttg
aacctcaagcctgtagaagaaggaaggaaggcaaaggaggacagtggcaacaaacccatg
tcaaaaaaagaaatgattgcccagcagcgtgaatataaaaagaagaaagctttgaaaaaa
gcacagagaataaaagaacttgaacaagaaagagaggaccagaaggtgaaatggcagcag
ttcaacaacagagcctattctaaaaacaaaaaaggccaggtaaagaggagtatttttgct
tcacctgagagtgtaactggcaaagttggagtaggaacttgtggaattgctgataaacct
atgacacagtatcaagatacctctaaatacaatgttaggcatttgatgcctcaataa

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