Phocoena phocoena (harbor porpoise): 136138669
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Entry
136138669 CDS
T11058
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136138669 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pphc03041
]
136138669 (EFTUD2)
Spliceosome [BR:
pphc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
136138669 (EFTUD2)
Complex C
U5 SnRNP specific factors
136138669 (EFTUD2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
136138669
NCBI-ProteinID:
XP_065753544
LinkDB
All DBs
Position
19:17503098..17536003
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEVDDDDDDDELGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVRHIPSPKVGAKPKIEHTYTGGVDADLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQISWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgagtttgggaattacattggaccagagcttgattctgat
gaagacgatgatgaattgggcagagagaccaaagatcttgatgaggtcgatgatgatgat
gatgacgacgagctgggagatcatgatgaagaccaccctgggatggaggtggtgctgcat
gaggacaagaagtactaccccacagctgaggaggtgtatggtcctgaagtggagaccata
gttcaggaggaggacacccagcctctcacagaacccattattaaaccggtgaaaaccaag
aaattcactctgatggagcagacattacctgtcacggtatatgaaatggatttcttggca
gatctgatggataactcggagctgatcagaaatgtgaccctttgtggtcatctccaccat
ggcaagacatgttttgtagattgtttaatagagcagactcacccggaaatcagaaagcgc
tacgaccaagatctttgctacactgacatcctcttcacagagcaagagaggggtgttggc
atcaagagtactcctgtgacagtagtcttgccagataccaaaggaaaatcctacctcttc
aatatcatggacactccaggacacgtgaatttttctgacgaggtcacagctggcttgcgc
atctcagatggagtggtccttttcatcgatgctgctgagggcgtgatgctgaacacagag
cggctgatcaagcacgccgtgcaggagaggctggcagtcaccgtgtgcatcaacaagatt
gaccggctgatcctagagctgaagctgccccccactgatgcctattacaagctgcgtcac
attgtagatgaggtcaacggattaataagcatgtattccactgatgagaacctaatcctt
tccccactcctgggcaacgtctgcttctccagctcccagtacagcatctgcttcacactg
ggctcctttgccaagatctacgctgacacctttggtgacattaactaccaggaatttgct
aaaagactctggggtgacatctacttcaaccccaagacgcgaaagttcaccaaaaaggcc
ccaaccagcagctcccagaggagcttcgtggagtttatcttggagcccctctataagatc
ctcgctcaggtcgtgggtgatgtggacaccagcctcccgaggaccctggatgagcttggc
atccacctgaccaaggaggagctgaagctgaacatccgccccctgctcaggctggtctgc
aaaaaattctttggcgagttcacaggctttgtggacatgtgtgtgcggcatatcccctct
ccaaaggtgggcgccaagcccaagatcgagcacacctacaccggaggtgtggatgccgac
ctcggggaggccatgagcgactgtgaccctgatggtcccctgatgtgccatactaccaag
atgtacagcacagatgatggagttcagtttcatgcctttggccgggtgctaagtggcacc
atccatgctgggcagcctgtgaaggtactgggagagaactacaccctggaggatgaggaa
gactcccagatatgcaccgtgggccgcctttggatctccgtggccaggtaccacatcgaa
gtgaaccgtgttcctgctggcaactgggttctgattgaaggtgtcgatcaaccaattgtg
aagaccgcgaccataactgaaccccgaggcaatgaggaggctcagattttccggcccttg
aagttcaacaccacatctgttatcaagattgctgtggagccagtcaacccctctgagctg
cccaagatgctggacggcctccgcaaggtcaacaagagctatccgtccctcaccaccaag
gtggaggaatccggtgagcacgtgatcctgggtaccggggagctctacctggactgtgtg
atgcacgatttgcggaagatgtactcggagatagacatcaaggtggctgaccccgttgtc
acgttttgtgagacggtcgtggaaacatcctccctcaagtgctttgctgaaactcccaat
aagaagaacaagatcaccatgattgctgagcctcttgagaagggtctcgctgaggacata
gagaacgaggtggtccagatctcgtggaacaggaagaagctgggagagttcttccagacc
aagtacgattgggatctgctggctgcccgttccatctgggctttcggccctgatgccacc
ggccccaacatcctggtggatgataccctgccctctgaggtggacaaggctcttctcggc
tcggtgaaggacagcatcgttcagggtttccagtggggaaccagggaggggcccctctgt
gatgagttgattcgaaatgtcaagtttaagatcctggatgcagtcgttgcccaggagccc
ctgcaccggggcgggggccaaatcatccccacggccagaagagtcgtctactctgccttc
ctcatggccacccctcgtctgatggagccctactacttcgtagaggtccaggcccccgca
gattgtgtttctgctgtttatactgtcctggccaggcgcagggggcacgtgactcaggat
gcacccatcccaggctcccctctctacaccatcaaagctttcatccccgccatcgactct
tttggctttgagaccgatctgcggactcacacgcaggggcaggccttttccttgtctgtc
ttccaccactggcagattgtacccggtgatcctctggacaagagcattgtcatccgtccc
ttggagccgcagccggcgccccacctggcccgagaattcatgatcaaaacccgtcgtagg
aagggcctgagtgaagacgtcagcatcagcaagttcttcgatgatcctatgttgctggag
ctcgccaagcaggatgttgtgctcaattaccccatgtga
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