Pannonibacter phragmitetus: APZ00_14425
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Entry
APZ00_14425 CDS
T04214
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr03030
DNA replication
pphr03410
Base excision repair
pphr03420
Nucleotide excision repair
pphr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APZ00_14425
03410 Base excision repair
APZ00_14425
03420 Nucleotide excision repair
APZ00_14425
03430 Mismatch repair
APZ00_14425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphr03032
]
APZ00_14425
03400 DNA repair and recombination proteins [BR:
pphr03400
]
APZ00_14425
Enzymes [BR:
pphr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
APZ00_14425
DNA replication proteins [BR:
pphr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
APZ00_14425
DNA repair and recombination proteins [BR:
pphr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
APZ00_14425
NER (nucleotide excision repair)
GGR (global genome repair) factors
APZ00_14425
MMR (mismatch excision repair)
DNA ligase
APZ00_14425
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APZ00_14425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
ALV30111
UniProt:
A0A0U3EVA7
LinkDB
All DBs
Position
3141109..3143268
Genome browser
AA seq
719 aa
AA seq
DB search
MTGTDSSNANTAVEALTLEQAAAELQRLAGEIAFHDARYHGEDAPVISDADYDALRQRNA
AIEARFPELMRSDSPSERVGAAPADGFGKVTHAVPMLSLDNAFADEDVRDFVGRVRRFLK
FDPLMGELAVTAEPKIDGLSLSLRYEKGVLVSAATRGDGAVGENVTVNARTIADIPHALP
AGVPEVVEVRGEVYMSHADFAALNARMAGNGGKVFANPRNAAAGSLRQLNPEITASRPLR
FFAYAWGQMSEVPCDTQFDMVRRFNDWGFVTNPRMVRCSSVEELLAVYHGIEEDRASLGY
DIDGVVYKVDRLDLQQRLGFVSRSPRWAIAHKFPAEKAYTILRDIEIQVGRTGALTPVAK
LEPVTVGGVVVSNATLHNEDYIKGIGTDGEPIRGGVDLRIGDTVQIQRAGDVIPQVIAVD
LERRPADATAFVFPDVCPACGSHAVREINAKTGRPDAVRRCTGGLVCPAQASEKLKHFVS
RNAFDIEGLGDKQVDAFFAEGLVRSPAEIFTLEARDKLALTKLRNREGWGAVSAKNLFEA
INARRRIDLNRFIFALGIRHVGEGNAKLLARAYGSFSAFSAAMEAAQDRSSEAWAELNAI
DGIGETVAEAVVQFFAEDHNREALAALLAEVTPQDAEKISAEGSPVAGKTVVFTGSLERM
TRDEAKAMAERLGAKVAGSVSKKTDLVVAGPGAGSKLKTAQDLGIEVITEDGWFDLVGG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaccgggactgacagctccaacgccaacacagccgtcgaggccctgacgctcgagcag
gccgcagccgaattgcagcggcttgccggtgagatcgccttccacgatgcgcgctatcac
ggcgaggatgcgccggtcatttccgatgcggattatgatgccctgcgccagcgcaacgcc
gccattgaggcccgctttccggagctgatgcgctcggacagcccgtccgagcgggtgggg
gctgcgccggccgatggcttcggcaaggtcacccatgcggtgccgatgctctctctcgac
aatgcctttgccgatgaggatgtgcgcgatttcgtaggccgcgtccgccgcttcctgaag
ttcgatccgctgatgggtgaacttgccgtcacggccgagccgaagattgacgggctgtcc
ctgtcgctgcgctatgagaagggcgtcctcgtcagcgctgccacccgtggtgacggtgcc
gtgggcgagaatgtcaccgtcaatgcccgcaccatcgccgatatcccgcatgcgctgcct
gccggtgtgccggaggtggtggaggtgcgcggtgaagtctacatgtcccatgccgacttt
gcggcgctgaacgcgcgcatggccggcaacggcggcaaggtcttcgccaatccgcgcaat
gcggcggccggttcgctgcgccagctcaacccggagatcaccgcctcacgccccttgcgc
ttctttgcctatgcctgggggcagatgagcgaggtgccctgtgacacccagttcgatatg
gtccgccgcttcaatgattggggcttcgtcaccaacccgcgcatggtccgctgctccagc
gtcgaggagcttctggccgtctatcacggcattgaggaagaccgcgccagccttggctat
gacattgacggggtcgtctacaaggtggaccggctggacctgcagcagcgccttggtttt
gtctcccgatcgccccgctgggcgattgcgcataagttcccggccgagaaggcctatacg
atcctgcgcgatatcgagatccaggtcggccgcaccggcgccctgacgccggtcgccaag
cttgagccggtgacggtgggcggcgtggtcgtatccaatgcaacgctgcacaacgaggat
tacatcaagggcatcggcaccgatggcgagccgatccgcggcggcgtggacctgcgtatc
ggtgacacggtgcagatccagcgcgcgggcgacgtgatcccgcaggtgattgcggtggat
ctggaacgccgcccggcggatgccacggcctttgtcttccccgatgtgtgcccggcctgc
ggcagccatgcggtgcgggagatcaatgcgaagaccggccgccctgatgctgtgcgccgc
tgtaccggcggcctcgtctgtccggcgcaggcttccgaaaagctgaagcacttcgtctcg
cgcaacgcctttgacatcgagggccttggcgacaagcaggtcgacgccttctttgccgag
gggctggtgcgcagcccggcggagatcttcacgctggaagcgcgtgacaagctggcgctg
accaagctgcgcaaccgtgaaggctggggtgccgtttctgcgaagaatctgttcgaggcg
atcaacgcccgccgccgcattgatctcaaccgcttcatcttcgcgctcggcatccgtcat
gtgggggagggcaacgccaagcttctcgcccgcgcctatggctccttctccgccttctcc
gctgccatggaagctgcgcaggaccgcagcagcgaagcctgggccgaactcaacgccatc
gacggcatcggcgaaaccgtggccgaggcggtggtgcagttctttgccgaagatcacaac
cgcgaggccctcgccgcgcttctggccgaagtgacaccgcaggacgccgagaagatcagc
gccgaaggctcgcccgtggctggcaagaccgtcgtcttcaccggctccttggagcgcatg
acccgcgacgaggcaaaagccatggccgaacggctgggcgccaaggtcgccggctccgta
tcgaaaaaaaccgatctcgtggtggccggccccggcgccggctccaaactcaagacggcc
caggatctgggcatcgaggtgatcacggaagacggctggttcgatctggttggcgggtga
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