Candidatus Phytoplasma australasiaticum subsp. australasiaticum: H7685_001620
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Entry
H7685_001620 CDS
T09447
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pphs
Candidatus Phytoplasma australasiaticum subsp. australasiaticum
Pathway
pphs03030
DNA replication
pphs03410
Base excision repair
pphs03420
Nucleotide excision repair
pphs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pphs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H7685_001620 (ligA)
03410 Base excision repair
H7685_001620 (ligA)
03420 Nucleotide excision repair
H7685_001620 (ligA)
03430 Mismatch repair
H7685_001620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphs03032
]
H7685_001620 (ligA)
03400 DNA repair and recombination proteins [BR:
pphs03400
]
H7685_001620 (ligA)
Enzymes [BR:
pphs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H7685_001620 (ligA)
DNA replication proteins [BR:
pphs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H7685_001620 (ligA)
DNA repair and recombination proteins [BR:
pphs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H7685_001620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H7685_001620 (ligA)
MMR (mismatch excision repair)
DNA ligase
H7685_001620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H7685_001620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
Motif
Other DBs
NCBI-ProteinID:
UQV26580
UniProt:
A0A9K3STQ1
LinkDB
All DBs
Position
349561..351573
Genome browser
AA seq
670 aa
AA seq
DB search
MLNIIKKIQQLTKKINQANHEYFNLNQSSLTDQQYDALLQELIYLENKYPQFKSKDSPTD
KIGSSLSDKKIPKITHSKPMLSLENAFDIAKVKKFYTRIKEKYPHCNFITELKIDGIAIN
LKYEQGVLTQATTRGNGLVGELVTHNIKNIKDIPSKLSQPINLEVRGEVFFNYENFQKLN
QQHNREQKKSFANPRNAASGTVRLLNANIVASRNLSSFFYNIVYSSLIVNSQQEVLELLK
KLGFSVNPHYNIINSWSDLTHFINHYIDLKSSLNYDVDGIVIKINQLDLYPQIGYTNKFP
KYALAYKFNSITGETIIKNILFYVGRTGIINPVADLVPIIIDGSTISRVTLHNYNYIQNK
DIRINDSVIIVKSGSIIPRIIKVITHKRDASVKPFIMITKCPSCDTLLNKDNNGINYFCI
NQECNEQQLQKIIHFASREAMDINILGSKTLTILFQKKIIQKISDLYNLKQHKQKLLKLP
FFGIKKINNILEAIESSKQKPFDRVLFGLGIKHVGSKIARILTHKFYNIDNLKQSKIEDL
ININEIGPEIADSIHNFFNDAKNINEIIQLKKHQLNFSIQNNINNINNNFFNNKKIIITG
TLTKYKRSQITKNLEKLGALIVHNLSQKTNYLICGKNYSEQKIEKAKHLNITIIQESELY
KILKQTNNQI
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatattataaaaaaaattcaacaattaactaaaaaaataaatcaagctaatcac
gagtattttaatttaaaccaatcttctttaactgatcagcaatatgatgcattattacaa
gaattaatatatttagaaaataaatacccacaatttaaatcaaaagatagccctactgat
aaaataggtagttctttaagtgacaaaaaaatacctaaaataactcatagtaaacctatg
ttatcattagaaaatgcctttgatattgcgaaggtaaaaaaattttatacaagaataaaa
gaaaagtatcctcattgtaattttattacagaattaaaaatagacggtatagctattaat
ttaaaatatgaacaaggcgttttaacacaagctactacaaggggtaatggtttagtaggg
gaattagtaactcataatattaaaaacattaaagatattccgtcaaaactttcacaacca
ataaatttagaagtaagaggggaggttttttttaattatgaaaattttcaaaaattaaat
caacaacataatagagaacaaaaaaaatcttttgctaatccgcgtaatgcggcttctgga
actgtaagattattaaatgctaatattgttgcttcaagaaacttatcttcttttttttat
aatattgtatattcatccttgatcgttaatagtcaacaagaagttttagaattattaaaa
aaattaggtttttctgtcaatccgcattataatataattaattcttggtctgatttaact
cactttatcaatcattatattgatttaaaatcatctttaaattatgatgtagatggtatt
gttataaaaataaatcaacttgatttatatccacaaatcggttacactaataaatttcct
aaatatgctcttgcttataaatttaactctattaccggcgaaactataattaaaaatatt
ttattttatgtcggaagaactggaataattaatcctgtagcagatctagtacctattatt
attgatggcagcacaatatcacgtgtaacattacataattacaattatatacaaaataaa
gatattcgtattaatgatagcgtaattattgtaaaatcaggttctattattcctagaatt
attaaagtaatcactcataaaagagatgcatctgttaaaccttttataatgatcacgaag
tgtccatcttgtgatacattattaaacaaagacaataatggaattaattatttttgtatt
aaccaggaatgtaacgaacaacaattacaaaaaataattcatttcgcatctcgagaagcc
atggacatcaatattttaggttccaaaacattaacaattttatttcaaaaaaaaattatc
caaaaaatttcggatttatacaatcttaaacaacataaacaaaaattactaaaattgcct
ttttttggcattaaaaaaattaataatattttagaagctatagaaagtagtaaacaaaaa
cctttcgatcgagttctatttggcttaggaataaaacatgttggtagcaaaattgctcgg
attttaactcataaattttataatatagataatttaaaacaatctaaaatagaagattta
ataaatataaatgaaataggaccagaaatcgcagatagtatacataatttttttaatgat
gcaaaaaatattaacgaaataattcaactaaaaaaacatcaattaaatttttctatacaa
aataatataaataatattaataataatttctttaataacaaaaaaattattattacaggc
acattaacaaaatataaacgttcacaaataactaaaaatttagaaaaattaggagcttta
atagtgcataatttatcccaaaaaactaattatttaatttgcggaaaaaattacagtgaa
caaaaaatagaaaaagctaaacatttaaatatcactattattcaagaatcagagttatat
aaaattttaaaacaaacaaacaatcaaatataa
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