Candidatus Pelagisphaera phototrophica: GA004_06530
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Entry
GA004_06530 CDS
T09061
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht01501
beta-Lactam resistance
ppht01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
GA004_06530
01503 Cationic antimicrobial peptide (CAMP) resistance
GA004_06530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppht03036
]
GA004_06530
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ppht02000
]
GA004_06530
01504 Antimicrobial resistance genes [BR:
ppht01504
]
GA004_06530
Chromosome and associated proteins [BR:
ppht03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
GA004_06530
Transporters [BR:
ppht02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
GA004_06530
Antimicrobial resistance genes [BR:
ppht01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
GA004_06530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YknX_C
BSH_CzcB
BSH_YknX
BSH_RND
BSH_CusB
Biotin_lipoyl
Beta-barrel_RND_2
HH_MFP_RND
HH_CzcB
BSH_Fcp1
BSH_YhbJ
BSH_LcnD
Motif
Other DBs
NCBI-ProteinID:
QXD33358
LinkDB
All DBs
Position
1481944..1483104
Genome browser
AA seq
386 aa
AA seq
DB search
MKSWISTVLFLALSISFCGCSKSGDPGKTTASNEAKEEKGKSGKDERQERAARIRPAVPV
KVSEVEEGIITSSLVFDSVLETESSVEIFAETAGLILEVHVEEGDRVVAGQILALMENVE
EGVDAEEAEARYEHQKANFKRTEDLYWRKLINQQEYDNAKFDLEQMRLRFERAKIQLENT
IVRSTVSGVVTERNTQAGRRVATNRAMFSIMNLDELFANVNIPGQHMLSIEQGLQAVIDS
DLIEGVRYDAFVKLVSPIVDPESGTFKAKVAVSKLNGMPIYPGMFVNVRVIVDTSDDAVL
IPKEAIVHEGDLKYIFKVQNGKAKKTLLQEGYSNVGFIQATSDIVKGDLVIVMGQSALKD
GANVKIVKEAVAAEQGITNASDAGQG
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgtggattagtacagtactgtttttagctttatcgatttccttttgcgggtgt
tcgaaaagtggtgacccaggaaaaacgaccgcgtccaacgaagcgaaagaggaaaagggt
aagtctggtaaagacgaaaggcaggaaagagcggctagaatccgcccggctgttccggta
aaggtctccgaagtggaggaaggtattatcacttcatccctcgttttcgactcagtcctt
gaaacggagagttcggtagaaatatttgctgaaactgcaggtcttattctcgaggtgcat
gtcgaggagggcgatcgcgttgttgctgggcaaattctcgcactcatggaaaatgtggag
gagggtgtagatgcggaggaggcggaagcccgctatgagcaccagaaagcgaattttaag
cgtacggaagacctgtactggcgtaagctcatcaaccaacaggaatacgacaatgcgaaa
ttcgatctcgagcaaatgcggctgagattcgagcgagctaagatccaattggaaaacacg
attgtacgttccactgtgagtggcgtcgtaactgagcgcaatacccaagcaggccggcga
gtcgctactaaccgagcaatgttttcgataatgaatttggacgagctattcgccaatgtg
aacattccaggacagcacatgctgagtatcgagcaaggtcttcaagccgttatcgactcg
gatttaattgaaggtgtccgatatgacgcgtttgttaaattggtgagtccaattgttgac
cccgaaagtgggacgttcaaagcaaaagtggcagtatctaaactgaacggtatgcccatc
tacccggggatgttcgtaaatgtacgcgtaattgtggatacgagtgatgacgcggttctg
attccaaaggaggcgattgtacacgaaggtgacctaaagtacattttcaaggtccaaaat
ggaaaagccaaaaagactcttcttcaggaaggctactccaatgtcggttttattcaggcc
acatcagatattgttaaaggagacttagtaatcgtgatgggtcagagtgctctcaaagat
ggagcgaatgtcaagattgtgaaagaagcggtagctgccgaacaaggcataactaatgca
agcgatgcaggccaaggctga
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