Candidatus Pelagisphaera phototrophica: GA004_06615
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Entry
GA004_06615 CDS
T09061
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht00300
Lysine biosynthesis
ppht00550
Peptidoglycan biosynthesis
ppht01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
GA004_06615
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
GA004_06615
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppht01011
]
GA004_06615
Enzymes [BR:
ppht01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
GA004_06615
Peptidoglycan biosynthesis and degradation proteins [BR:
ppht01011
]
Precursor biosynthesis
Amino acid ligase
GA004_06615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
DUF3373
Motif
Other DBs
NCBI-ProteinID:
QXD33374
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Position
1502734..1504302
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AA seq
522 aa
AA seq
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MGKLRSRPTMEQYKIGCRMERLKKMSGSGKSLSKLIKKSGAKLKRGSPDPIVTRLVIDSR
RVTPGSLFFALPGLRQDGSAFIDEALRRGAVGVVSSEPRRFGNSKAVFVQADDPRLTLAK
VARRFFGKPDKDIDLFGITATNGKTTVSYLAKHFLSLDGVKTGCLGTIGYDLVDRVLPSF
RTTPEAHELCELLSQMRDFGCTRAVMEVSSHGIDQLRIAELKFKVGVFLNLTRDHLDYHG
DMENYFAVKRRFIDGEIGTVPKKLVLNVDDTYGRRLADEHKEESTITFGTSKQARLRATD
IELAPDGATFTLEWDGKRYLVNSPLIGLYNVSNTLAALSMAVLGDVPVEKCIGSLNSFGG
IPGRMERVITGQPFEVVVDYAHTGNALENALKMLQEITPGKVKVVFGCGGDRDRGKRVEM
TKVSTELADYCWATTDNPRSEVQEQIFDDMREGISDHSKIEFVLDRRRAIELALKSADPG
DCVLIAGKGHEPFQEYGDTVVPFDDRKVARELLESMKLGGRI
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaattgagaagccgaccgacaatggaacaatataagattgggtgtcgaatggaa
agactgaagaaaatgagtggcagcgggaagagcctaagtaagttgataaagaaaagtggg
gccaaattaaagcgcggttctcctgaccctattgtgactcgactggtgatcgacagtaga
cgtgttacgcctgggagcctgtttttcgctcttcctggactcaggcaggatggcagcgcg
tttattgacgaggctcttcgaagaggggctgtcggtgtcgtctcgagcgagcctcgacgg
ttcgggaattcgaaagcggtatttgtccaagcggatgatccgcgtctgactttagcaaag
gtagcgaggcgtttttttggcaagcctgacaaggatatcgatttatttggaataacggct
acgaatgggaaaactacggtatcctatttggcgaaacacttcctttccctcgatggcgta
aaaacgggatgcctggggactattgggtatgacctggtcgatcgagtcctcccttcgttt
cgaacaactcccgaggcacatgagttgtgcgaactgctttcgcagatgagggatttcggc
tgtacccgtgccgtcatggaagtcagctcgcatggaatcgaccaactcaggatagcagag
ctgaaatttaaagtaggggtctttctgaatctgactcgtgaccatttagactatcatggg
gacatggagaactatttcgcggtcaaaagacgcttcattgatggagagattggcactgta
cccaaaaaattagtattgaacgtagatgacacttatggtcgtcgtctagcggacgagcat
aaagaggagtccactattacttttggcacatccaaacaggcacggcttagggctacggat
attgaattagctccggacggagcgactttcacgctggaatgggacggcaaacggtatctc
gtcaactcgcctcttatcgggctatacaatgtgagcaataccttggccgctctttcaatg
gctgttctaggagacgttccggtcgagaaatgtattggtagtttgaattcgtttggagga
attccgggaagaatggaacgcgtcattaccgggcagccttttgaagttgtagtggactat
gctcatactggaaatgccttggaaaacgccttgaaaatgcttcaagagatcactcctgga
aaggtaaaagtcgtctttggatgtggcggagatcgcgatcgtggaaaacgggtcgagatg
acgaaagtttccacggaattggcagactattgctgggccacaaccgataatccgcgttcg
gaggtgcaagagcaaatatttgatgatatgcgggaagggatatcggatcactcgaagatt
gaatttgtattggatcgtagaagggcaatcgaattggctctgaaaagcgctgatccggga
gattgtgttttgattgcgggaaagggacatgagccttttcaggaatacggtgacaccgtg
gttcctttcgatgacagaaaggttgcaagggagttgttggagtcgatgaaattgggtgga
cgaatctga
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