Candidatus Pelagisphaera phototrophica: GA004_06885
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Entry
GA004_06885 CDS
T09061
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GA004_06885 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_06885 (nth)
Enzymes [BR:
ppht01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GA004_06885 (nth)
DNA repair and recombination proteins [BR:
ppht03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GA004_06885 (nth)
Prokaryotic type
GA004_06885 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
RecR_HhH
DUF2400
Motif
Other DBs
NCBI-ProteinID:
QXD33424
LinkDB
All DBs
Position
1566143..1566793
Genome browser
AA seq
216 aa
AA seq
DB search
MLKKERAAIVDRELDRLYPDPPIPLDHKDPYTLLVAVLLSAQCTDLRVNKTTPALWKLAD
NPVDMAKVEAEAIREIIRPCGLSPRKSQAIRDLSQILVDKFDSEVPACFDDLEALPGVGH
KTASVVMSQAFGHPAFPVDTHIHRLAQRWGLTKGRNVDQTERDLKALFPIDRWNALHLQI
IYYGREHCTARGCDGKVCPLCRTFYPNRKTAVKTRK
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaaaaagagagagctgctattgtggatagggaattggatcggctttatccggat
ccgccaattcctctcgaccacaaggatccgtacacgttgctggtagcggtactgctttct
gcgcagtgcacggatcttcgggtaaataagacgaccccagctctatggaaactggcagac
aatccggtggatatggcaaaggtggaggcggaagcgattcgggaaatcattagaccttgc
ggattgtctccccgaaagtctcaggcgataagggatctttctcagatactggtcgataag
ttcgatagcgaagtgccggcttgtttcgatgacttggaagcactacccggagtcggccat
aagaccgcctcggtcgtcatgtcccaagcatttggtcacccggcgtttccggtggatacg
catatccatcgactggcccagcgttgggggcttacgaagggacgaaacgttgatcagaca
gaaagggacttaaaagcccttttcccgattgaccgttggaacgcgttgcatttgcagatt
atctattacggacgggagcattgtactgcaagagggtgcgacgggaaggtttgccctttg
tgcaggaccttctatcccaaccggaaaacggcggtcaaaacacggaaataa
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