Pseudomonas piscis: QL104_29285 Help Entry QL104_29285       CDS       T09652                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism ppii  Pseudomonas piscis Pathway ppii03030   DNA replication ppii03410   Base excision repair ppii03420   Nucleotide excision repair ppii03430   Mismatch repair Brite KEGG Orthology (KO) [BR:ppii00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     QL104_29285 (ligB)    03410 Base excision repair     QL104_29285 (ligB)    03420 Nucleotide excision repair     QL104_29285 (ligB)    03430 Mismatch repair     QL104_29285 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:ppii03032]     QL104_29285 (ligB)    03400 DNA repair and recombination proteins [BR:ppii03400]     QL104_29285 (ligB) Enzymes [BR:ppii01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      QL104_29285 (ligB) DNA replication proteins [BR:ppii03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      QL104_29285 (ligB) DNA repair and recombination proteins [BR:ppii03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      QL104_29285 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      QL104_29285 (ligB)    MMR (mismatch excision repair)     DNA ligase      QL104_29285 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       QL104_29285 (ligB) BRITE hierarchy Motif Pfam:  DNA_ligase_aden DNA_ligase_OB RNA_ligase HHH_5 Motif Other DBs NCBI-ProteinID:  WMN17392 LinkDB All DBs Position 6278785..6280455 Genome browser AA seq 556 aa AA seqDB search MLPRLLLLTIFIPLSAQAHCPDWPATRADVEIATLHQQLQRWDTSYHRDGQALVADELYD QARQRLDTLQGCFPLVPQARARPLATARGNIAHPVAHTGVEKLPGADAVRLWLRNRREVW VQPKIDGVAVSLIYRKGRLHQALSRGDGLLGHDWSSVARQIPAIPQQLPQPVDLLLQGEL YQRLEGHVQARAGSRNARSRVAGWMARKHLEPDAAAQIGLFVWDWPQGPQAMDERLEQLA KLGFTEGREYSRRIANFDAARHWREHWYRSALPFASDGIILRLGRRPAAERWQARNPHWI AAWKYPYIQALANVREVEFRVGRTGRITPLLHIEPVTLDDRQIRRVSAGSLRRWRELDIL PGDQVAVSLAGLTIPRLDGVVLRAPQRAPLQAPVQSDFHALSCWQPSPGCESQFLARLTW LSGKQALDLEHVGEQTWVRLMQAGRIKSLLDWLTLDQAELVNMAGFGERSSARLLESLHN ARRRPFALWLKALGLPPSGAADLGGSWQALALKSSLDWQQEGEVGVERAERLAAFFRDPQ VLALRATLNAAGVEGF NT seq 1671 nt NT seq  +upstreamnt  +downstreamnt atgctgccaagactgctcctgctgacgatcttcatcccgctgtcggcccaggcccattgc ccggactggccggcaacccgggccgacgtggaaatcgccaccctgcaccaacaactccag cgctgggataccagctatcaccgggacggccaggcgttggtggccgatgaactctacgat caggcccgccagcgactggatacgctgcaaggctgcttcccactcgtgccccaggccaga gcccgtccgctagccactgcccgcggcaatatcgctcacccggtggcccataccggtgtg gaaaagctcccgggcgccgacgccgtgcgactctggctgcgcaaccgcagggaagtctgg gtgcagcccaagatcgacggcgtggccgtgagcctgatctaccgcaagggccgcttgcac caggcactgagtcggggcgatggcctgctgggccacgactggagcagcgtggcccggcag atcccggccattccccaacaattaccgcagcccgtggacctgttgctccagggtgagctg taccagcgcctggagggccacgtgcaggcccgggccggcagccgcaatgcccgtagccga gtggcgggctggatggcccgcaaacacctggagcccgatgccgcggcacaaatcggcttg ttcgtctgggattggccacaagggccacaggcgatggatgaacgcctggagcagttggcc aagctgggttttaccgaaggccgcgaatacagccgcaggatcgccaacttcgacgcggcc cggcattggcgcgaacactggtaccgctcggcgctgccgttcgccagcgacggaatcatc ctgcgcctgggccgacgccccgcggccgaacgatggcaggcccggaatccgcactggatc gccgcctggaagtacccctacatccaggccttggccaatgtccgcgaggtagagtttcgc gtcggtcgcaccgggcgcatcacgccactgctgcacatcgaaccggtcactctcgacgat cggcagatccgccgggtcagcgctggctcgctacgccgctggcgcgagctggacatcctc cccggcgaccaggtggccgtcagtctcgccggcctgaccattccccgcctggatggcgtg gtcctcagggcaccgcagcgtgcaccgctccaggcgccggtgcagagcgacttccacgcg ctgagctgctggcaaccctcccccggatgcgaaagccagttcctggcacgcctgacctgg ctcagtggcaagcaggccctggatctggagcatgtcggcgagcaaacctgggtacgcctg atgcaagcggggcgaatcaagagcctgctggattggttgaccctcgaccaggcagagctt gttaacatggccggcttcggcgaacgcagcagcgcacgcctgctcgaaagcctgcacaac gccaggcggcgacccttcgcactttggctgaaggccctgggcttgccgcccagtggcgcg gccgacttgggcgggtcatggcaggcgctggcactcaagagcagcctggactggcagcaa gaaggcgaggttggggtggaacgcgcggagcgactggcagcgttctttcgcgacccgcag gtactggccttgcgtgccaccctgaatgccgccggcgtcgaaggtttttaa

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