Photobacterium piscicola: ACJZU6_12465
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Entry
ACJZU6_12465 CDS
T11087
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03030
DNA replication
ppil03410
Base excision repair
ppil03420
Nucleotide excision repair
ppil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACJZU6_12465 (ligA)
03410 Base excision repair
ACJZU6_12465 (ligA)
03420 Nucleotide excision repair
ACJZU6_12465 (ligA)
03430 Mismatch repair
ACJZU6_12465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppil03032
]
ACJZU6_12465 (ligA)
03400 DNA repair and recombination proteins [BR:
ppil03400
]
ACJZU6_12465 (ligA)
Enzymes [BR:
ppil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACJZU6_12465 (ligA)
DNA replication proteins [BR:
ppil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACJZU6_12465 (ligA)
DNA repair and recombination proteins [BR:
ppil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACJZU6_12465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACJZU6_12465 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACJZU6_12465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACJZU6_12465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF7463
DZR_2
Motif
Other DBs
NCBI-ProteinID:
XLM57770
LinkDB
All DBs
Position
1:complement(2630501..2632519)
Genome browser
AA seq
672 aa
AA seq
DB search
MSTDLQQQLASLKQQLDYHGHRYYVEDNPEVPDAEYDRLMQQLLAIEAEYPQWVTPDSPS
QRVGGSALDGFTQVTHEIPMLSLGNAFNDDDLRDFQKRLQDRLRDNSSIHYCCEPKLDGL
AVSLLYENGILVQAATRGDGTTGENITHNVRTIGAIPLRLRGDDWPQRLEVRGEVFMPKK
GFDELNAKALKKGLKTFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVEGRELADTQ
YQRLCQLKAWGLPMCPEIRMVDSIEAVIEYHQMIGDKRQLLGYEIDGVVIKVDQLDLQLQ
LGFVARAPRWAIAYKFPAQEEMTILNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEVSRLGVMIGDTVIIRRAGDVIPQIAAVVESRRPADAVAIVFPTQCPVCQSKVERVE
GEAVARCSGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDREMVMTPADLFKFSA
GEVTVLERMGPKSAQKLVDALSASKQTTLARFIYSLGIREVGEATAANVANYFETLEAIS
LASKDQLIKVPDVGEVVAAHLFNFFREPHNTAVIDDLLAQGIHWPVIEKPQAGVELPLDG
KVVVLTGSLSQLTRGDAKAALQALGAKVTGSVSKKTDLLVAGEAAGSKLTKAQELNIEIW
DEEQLVDLINNA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgaccttcagcaacaacttgccagcttaaaacaacaattagattatcatggc
catcgttattacgttgaagataaccctgaggtaccggatgctgaatatgatcgtctgatg
caacagttattggcgatagaagctgaatatccacaatgggtaacacctgactcaccaagc
caacgtgttggtggcagtgccttagacggtttcactcaagtaacccatgaaattccaatg
ttatcattaggtaatgcatttaatgatgatgatttacgtgattttcaaaaacgtcttcaa
gatcgattacgagataacagcagtattcattactgctgcgaacctaagttagatggctta
gcggtaagtttattgtatgagaatggcattctggtgcaagcagcaacacgaggtgatggt
acaacgggtgaaaatatcactcataacgtacgtacgattggtgcaatcccactacgttta
cgcggtgatgattggccgcagcgtttggaagtgcgtggtgaagtctttatgccaaagaaa
ggctttgatgagctaaatgccaaagcacttaaaaaaggccttaaaacttttgctaaccca
cgtaatgctgcagccggaagtttacgtcagcttgatcctaaaattaccgcaacgcgtcca
cttagtttttatgcttatgcggtaggagtcgttgagggacgtgaattagcggacacgcaa
tatcaacgtctatgccagcttaaagcatggggtctacccatgtgcccagaaattagaatg
gttgatagcattgaggcggtgattgagtaccatcaaatgatcggtgataaacgccaatta
ttagggtatgaaattgatggggttgtgatcaaggttgatcagttagatctacagttacaa
ttaggttttgttgcgcgtgcacctcgttgggcgattgcttataagtttccagcccaagaa
gaaatgaccattttaaacaatgttgaatttcaagttggccgcacaggtgcaataacacca
gtagcaaaacttgaaccagtatttgttggcggagttaccgtcagtaatgcgacgttgcat
aatgctgatgaagtgtcacgtttaggggtcatgattggtgatacggtgatcattcgtcgt
gctggtgatgttattcctcaaatagccgcggtggttgaatctcgtcgccctgctgatgct
gttgcgatagtctttccaacacaatgtcctgtgtgccaatctaaagttgaacgtgttgaa
ggagaggctgtagcgcgttgttctggtggcttattttgccaagcgcaacgtaaagaagca
ctaaagcattttgtttcacgtaaagcattagatgttgatggctgtggtgaaaaagtgata
gagcaattggttgatcgcgagatggtgatgacgcctgctgacttgtttaagtttagtgct
ggtgaagtaacggtacttgagcgcatggggcctaaatctgcgcaaaaattagttgatgct
ttatctgcgtcgaagcaaacaacccttgcacggtttatttattcattagggattcgtgag
gtgggtgaagcgaccgctgctaatgttgctaattattttgaaacattagaggcgatcagt
ctggcctctaaagatcagttaataaaagtacctgatgtcggtgaagtggttgccgctcat
ttgttcaatttcttccgtgaacctcacaatacagccgttattgatgatttattggcacaa
ggtattcattggcctgtgattgaaaagccgcaagcaggagttgaattaccgctagatggc
aaagttgttgtgctaacaggatcattgtcacaattaacccgtggtgatgctaaagcggca
ttacaggcattaggggcgaaagtgacgggcagtgtttctaaaaagactgatttattagtt
gcaggtgaagccgctggttctaaattgaccaaagctcaagagttaaatattgaaatttgg
gatgaagaacagctcgtcgatttaatcaataacgcataa
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integrated database retrieval system
