Pseudomonas plecoglossicida: RK21_05557 Help Entry RK21_05557        CDS       T03646                                  Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism ppj  Pseudomonas plecoglossicida Pathway ppj03030   DNA replication ppj03410   Base excision repair ppj03420   Nucleotide excision repair ppj03430   Mismatch repair Brite KEGG Orthology (KO) [BR:ppj00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     RK21_05557    03410 Base excision repair     RK21_05557    03420 Nucleotide excision repair     RK21_05557    03430 Mismatch repair     RK21_05557  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:ppj03032]     RK21_05557    03400 DNA repair and recombination proteins [BR:ppj03400]     RK21_05557 Enzymes [BR:ppj01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      RK21_05557 DNA replication proteins [BR:ppj03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      RK21_05557 DNA repair and recombination proteins [BR:ppj03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      RK21_05557    NER (nucleotide excision repair)     GGR (global genome repair) factors      RK21_05557    MMR (mismatch excision repair)     DNA ligase      RK21_05557   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       RK21_05557 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_OB DNA_ligase_aden HHH_5 RNA_ligase DUF3701 Motif Other DBs NCBI-ProteinID:  AJG17065 LinkDB All DBs Position complement(5856704..5858404) Genome browser AA seq 566 aa AA seqDB search MPLMLLFALLLTLNAPLARAATCPTWNPQQVEAEVSRLRATLARWDDHYHRQGIALVADE LYDQSRQHLAHLQQCFGITTTPSPLASAGGPIPHPVPHTGVDKLADLQAVERWLAGKADV WVQPKVDGVAVSLIYRQGRLVQLISRGDGVQGHDWSRHIPLLVEINRQLPQAIDLQLQGE LYLRLDAHVQARAGSANARGTVAGLLARKQLGREQGERIGLFVWDWPQGPEQQAERLAKL AELGFAHSQDYSVAIETADDAAHWREYWYRSPLPFATDGVVLRQGVRPPSERWQAKAPYW IAAWKHPYTQALAEVREVRFRVGRTGRVTPVLHVLPVTLDDRRITQVSLGSLARWRKLDI RPGDQVAVSLAGLTIPRLEQVVHRAAERQPVIAPAPGQHHAHSCWQISEGCEDQFIARLT WLSGKQGLALPRTGPGTWRRLVAAGLVTSMTDWLHLDAERLAQVAGISDTTAAQLLGSFD QARSRPFAQWLRGLGAPTPTRMQVTGDWLELAARTSLEWQAMPGIGEKRGEQLAGFFATT EVQAIATQLATAGIDGFRIDRQSIEQ NT seq 1701 nt NT seq  +upstreamnt  +downstreamnt atgccgctcatgctgcttttcgccctactgttgacgttgaatgctcccctggcccgtgcc gccacatgtcccacctggaacccgcaacaagtcgaggctgaagtgagccgactgcgcgcc acgcttgcccgctgggacgaccattatcatcgtcagggcatcgcattggtggctgatgaa ctatacgaccagagccgccagcacctggcgcacctgcagcaatgctttggcatcacgact accccgtccccgctggccagcgctggcgggccaattccgcatccggtgccgcacaccggc gtcgacaagctggccgaccttcaggctgtagaacgctggctggccggcaaggcagatgta tgggtgcaaccaaaggtcgatggcgtagcggtctccctcatctaccgtcagggccggctg gtgcagttgatcagccggggggacggcgtgcaggggcacgactggagccgccacatcccc ctgctcgtcgaaatcaatcggcagctgccccaggccattgacctgcaactgcagggcgaa ctgtacctgcgcctggacgcgcatgtgcaagcccgggcaggcagcgccaacgcccgaggg acagtagccgggctgctggctcgcaagcagctgggtcgtgagcaaggtgagcgcatcggc ctgttcgtgtgggactggccgcagggccccgagcagcaggccgaacgcctcgcgaagctg gcggaactgggttttgcgcacagccaggattacagcgtcgccatagaaacagcagacgat gcagcgcactggcgcgagtactggtaccgctcacccctgcccttcgccaccgatggcgtt gtgttgcgccaaggcgtccggcctccgtccgagcgctggcaggccaaggcgccctactgg atcgcggcgtggaagcacccgtacacgcaagccttggccgaagtgcgcgaagtacgcttc cgcgtcggccgtaccggcagggttacgccagtcttgcatgtactgccggttaccctggat gaccggcgaatcacccaggtgagcctgggatcgctggcacgttggcgcaagctcgacatc cgccccggtgaccaggtggccgtcagccttgccgggctgaccatcccacgcctggagcaa gtggtgcaccgcgccgccgagcgccaaccggtgatcgcaccagcgcccggccagcatcat gcccacagttgctggcagatcagcgaaggctgcgaggaccagttcattgcccgcctcacc tggctcagcggcaagcaggggctggccctgccgcgcaccggccctggtacctggcgccga ctggtggctgccgggctggtgacctcgatgaccgactggctgcatctggatgccgagcgc ctggcccaggtagcgggtatcagtgacacaacggctgcgcagttgctgggcagtttcgac caagctcgctcacggccctttgcccaatggctgcgcgggcttggcgcgcctacacccacc aggatgcaggtaacaggcgactggctggagctggctgcccgcacgagtcttgaatggcaa gccatgcccggtatcggcgaaaagcgcggagaacagcttgctggtttttttgcaaccacc gaggttcaagccattgcaacgcaactggcgacggcagggatcgacggattccggatcgac aggcaaagcatcgagcaatga

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