Paenibacillus polymyxa SC2: PPSC2_13660
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Entry
PPSC2_13660 CDS
T01335
Symbol
ygdE
Name
(GenBank) SAM-dependent methyltransferase
KO
K06968
23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:
2.1.1.186
]
Organism
ppm
Paenibacillus polymyxa SC2
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppm03009
]
PPSC2_13660 (ygdE)
Enzymes [BR:
ppm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.186 23S rRNA (cytidine2498-2'-O)-methyltransferase
PPSC2_13660 (ygdE)
Ribosome biogenesis [BR:
ppm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PPSC2_13660 (ygdE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FtsJ
Methyltransf_25
Methyltransf_11
Methyltransf_23
Methyltransf_12
Methyltransf_24
Motif
Other DBs
NCBI-ProteinID:
AKA44257
UniProt:
A0A0D5ZCI6
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All DBs
Position
complement(3097553..3098611)
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AA seq
352 aa
AA seq
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MNTDEQSECALSSSRFVCTANHGFAPYAQEELRRLFGSVKSTMLLPGEIFLATLPAGEIE
TVRTITGQPPMFLRHLFPVHFQEEGTDLVQVQERLVAFIRNRRELIDQRVSLQVRKGTNS
SWTESAGALRLALSEQLSDLPMELVVQGADVIVSVFADTDTWYAGVSHPQDNLSDWSGGA
VRFQKEDGQISRAKFKLLEAEATFGIDFSAFHQGLDIGAAPGGWTSFLLERGLKVTAVDP
AKMEPSLMKYANLTFLRKNASEVKFKENSFDLLVCDMSWSPKQMARLVTDLLYSLRSGGT
AIVTVKLMHKKPLALIHDVIASFEESGMQIQRAKQLFHNRDEITLYMIKYGK
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagatgaacagagtgaatgcgctttgtcatcatcaagatttgtttgtacggcc
aaccatggttttgcaccctatgctcaagaggagcttagaagattatttgggtctgtaaaa
agtacaatgcttctacctggtgaaatttttttagcaacactacccgcgggagaaattgaa
acagtgaggacgattacaggccagccaccaatgtttcttcgccacttgtttcctgttcat
tttcaggaggaaggaacggatctggttcaagtgcaagagcgtctggttgcatttatccgt
aaccgcagggaactgatagatcaacgtgtttctttgcaagtacgcaaaggaactaatagc
agttggactgaaagcgcaggtgcactcaggctggctttgagtgaacaattaagtgatcta
cctatggagttggtggtacaaggcgccgatgttattgtgtccgtttttgcagatacggat
acgtggtacgcaggcgtatcacatcctcaggacaacctatcggattggagtggaggtgca
gttcgttttcagaaggaagacggacagatctctcgtgccaaattcaagctactggaagca
gaagctacgttcggtattgattttagcgctttccatcagggactagatattggggcagca
ccgggtggatggacttcctttttgctggagcgtggactgaaagttacagcggttgatccg
gccaagatggagccatcactgatgaagtacgccaacctgacgtttttgcgtaaaaatgca
agtgaagtcaaatttaaagagaattcgttcgatctgctggtttgtgatatgagctggagt
ccaaaacagatggcaaggctcgttactgatttactatatagtttgcggagtggtggtacg
gctatcgtaacagtcaagctaatgcataaaaagcccttggcgctcattcatgatgtgatt
gcttcatttgaggagtccggcatgcagattcagcgagctaagcagcttttccataaccga
gatgagattaccctgtatatgatcaagtatggaaaataa
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