Paludibacter propionicigenes: Palpr_1062
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Entry
Palpr_1062 CDS
T01362
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppn
Paludibacter propionicigenes
Pathway
ppn03030
DNA replication
ppn03410
Base excision repair
ppn03420
Nucleotide excision repair
ppn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Palpr_1062
03410 Base excision repair
Palpr_1062
03420 Nucleotide excision repair
Palpr_1062
03430 Mismatch repair
Palpr_1062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppn03032
]
Palpr_1062
03400 DNA repair and recombination proteins [BR:
ppn03400
]
Palpr_1062
Enzymes [BR:
ppn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Palpr_1062
DNA replication proteins [BR:
ppn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Palpr_1062
DNA repair and recombination proteins [BR:
ppn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Palpr_1062
NER (nucleotide excision repair)
GGR (global genome repair) factors
Palpr_1062
MMR (mismatch excision repair)
DNA ligase
Palpr_1062
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Palpr_1062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
ADQ79211
UniProt:
E4T3B7
LinkDB
All DBs
Position
complement(1283578..1285608)
Genome browser
AA seq
676 aa
AA seq
DB search
MIKDQIESLRRELEQHNYNYYVKSAPTISDFEFDAKLRQLQELEAAHPEFFDPNSPTQRV
GSDIASGFEQVAHVYPMLSLGNTYSEGEVQDFYERVRKGLNEDFELVCELKYDGTSISLT
YEDGVLVRAVTRGDGEKGDDVTANVKTIRSIPLRLQGNYPKSFEIRGEILMPWSVFDDLN
REREEQEEQLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPSDLHSENLEAAH
SWGFKISDATKVCRTLDEVSAFINYWDVERKNLPVATDGIVLKVNSLSQQRALGFTAKSP
RWAIAYKFQAEKAVTRLNSVSYQVGRTGAVTPVANLDPVQLSGTTVKRASLHNADIIEAL
DLHIGDMVFVEKGGEIIPKITAVDKDARLLIGDKVQFIKSCPECGAALVRFEGEAAHYCP
NENACPPQIKGKMEHFVSRKAMNIDGLGSETINLLYQNDLLHNIADIYTLKVPDLIRLER
LGTKSAYNIKEGAEKSKEIPFERVVFALGIRFVGETIAKKLAYAFKNIEALEQASYDELV
AVDEIGGRIAQSVVAYFSDSLNIEMLNRLKEYGLQMSLSEDKLQAHGTALAGLSIVISGT
FSKHSRDEYKTMIERNGGKNVGSVSAKTSFILAGDNMGPEKLKKAEKLGVKLVNEDDFLS
MIGADAQAQTQEGLLF
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagaccagatagaatcgcttcgtcgcgaacttgaacagcataactataactac
tatgtgaaatcggctcctaccatttccgattttgagttcgatgccaagctccggcagttg
caggaactggaggcggctcacccagagttcttcgatccgaattcgcctacgcaacgtgtc
ggaagcgatattgccagcggttttgagcaagtggcgcatgtttatcccatgctttcgctt
ggaaatacctattccgaaggtgaagtgcaggatttttacgagcgggtgcgcaaagggttg
aacgaagattttgaactggtttgtgaattgaaatacgacggaacatccatttcgctcact
tacgaggatggagtgttggtgcgtgctgtgacccgtggcgatggcgagaagggtgatgat
gtaaccgccaacgtgaaaacaatacgtagcattccgttgcgcctgcagggaaattatccc
aaatcgttcgaaatacggggcgaaatacttatgccatggtcggtgttcgacgacctgaac
cgcgaacgcgaagagcaggaagaacaactctttgccaatccgcgcaacgcagcttcggga
acattgaagttgcagaattcctcggtggttgccagtcgcaagctggatgcctatctgtat
tatttgctgggcgaaaatcttccgtccgacctgcattccgagaatctggaagcagcacac
tcgtggggtttcaaaatatccgatgccactaaagtttgccgaacgctggacgaagtctcg
gcttttatcaactattgggatgtggaacggaaaaatcttccggtggctactgatggcatt
gtgttgaaagtaaattcgctctctcaacaacgcgcgttgggctttaccgccaaatcgccc
cgttgggccattgcctataagtttcaggccgaaaaagcagtgacgcggctcaattccgtt
tcgtatcaggtgggtaggacaggggctgtaactccggtggccaacctggatccggtgcaa
ctttcgggtacgaccgtgaagcgtgcttcgctgcacaatgccgacattatcgaagcgctt
gatttgcatattggcgatatggtttttgtggaaaagggcggcgaaattattccgaagatt
acggctgtggataaggatgcacgactgttgataggtgataaagtgcagtttatcaagagt
tgccccgaatgtggtgctgcattggtacgcttcgaaggcgaagccgcacattattgtccc
aatgaaaatgcttgtccgcctcagattaaaggaaagatggagcattttgtcagccgcaaa
gccatgaatattgatggattggggagcgagaccattaatctgctttatcaaaatgattta
ttgcataatattgccgatatttacacactgaaagtgcccgacctgattcggttggagcga
ctgggtacaaaatcggcctataatataaaagaaggggctgaaaagtcgaaagaaataccg
tttgaacgggttgtatttgccctcggaatacgctttgtgggcgaaactatagccaaaaaa
ctggcgtatgctttcaaaaatatcgaagcgttagaacaagctagttacgacgaactggta
gcggtagatgagattggtggacggattgcccaaagtgtggtggcttatttttccgattcg
ttgaacatagaaatgctaaaccgactgaaagaatatggattgcaaatgagcctatcggaa
gataaattgcaagcccacggaactgcgctggcaggcctgtcgatcgttatcagcggtacg
ttttcaaaacattcgcgcgacgagtataaaaccatgatagagcgcaacgggggtaagaat
gtcggaagcgtttccgccaaaacctcattcatactggccggagataatatgggacccgag
aaactgaaaaaggctgaaaagctgggagtgaaattagtaaatgaagatgacttcttgtcg
atgataggtgcagacgcacaagctcagacacaggaagggttattattctaa
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