Pandoraea pnomenusa RB38: DA70_05320
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Entry
DA70_05320 CDS
T03067
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppno
Pandoraea pnomenusa RB38
Pathway
ppno03030
DNA replication
ppno03410
Base excision repair
ppno03420
Nucleotide excision repair
ppno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DA70_05320 (ligA)
03410 Base excision repair
DA70_05320 (ligA)
03420 Nucleotide excision repair
DA70_05320 (ligA)
03430 Mismatch repair
DA70_05320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppno03032
]
DA70_05320 (ligA)
03400 DNA repair and recombination proteins [BR:
ppno03400
]
DA70_05320 (ligA)
Enzymes [BR:
ppno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DA70_05320 (ligA)
DNA replication proteins [BR:
ppno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DA70_05320 (ligA)
DNA repair and recombination proteins [BR:
ppno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DA70_05320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DA70_05320 (ligA)
MMR (mismatch excision repair)
DNA ligase
DA70_05320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DA70_05320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AHN73951
LinkDB
All DBs
Position
2391568..2393625
Genome browser
AA seq
685 aa
AA seq
DB search
MSDDATVGAQRAAELRRELARHNRAYYEEDAPLIPDAEYDRLFAELVALEARFPELQRAD
SPTQRVGGKPVEGFAPVVHRVPMLSLNNGFADEDVEAFDRRVTDGLRDGNAAGASGDLFG
APVEYAAELKFDGLAIALRYERGVLVQAATRGDGTTGEDVTANIRTIKKIPLRLETDDPP
EVLEVRGEVLMFRADFDKLNRMQEAAGEKVFVNPRNAAAGSLRQLDSRITARRPLSFFAY
GIGELVGAPMPQTHSALLDWYVTLGIPVNDRREVVQGAHGLLAFYRTVGEARPSLPYDID
GVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTTLLDIEVQVGRTGAITPVARLAP
VFVGGATVTNATLHNEDEIRRKDVMIGDTVIVRRAGDVIPEVVGSVLERRPADARAFVMP
TACPVCGSAIEKLPDEVIARCTGGLICAAQRKQALLHFAQRRALDIEGLGDKLVEQLVDQ
HIIRTPADLFKLGVAKLAALDRMADKSAANLVAALEAARHTTLARFIFALGIRHVGEATA
KDLARHFGTLDNVMAASTEELLAVPDVGPIVAQSIANFFGEPHNVEVIEQLRAAGVTWPE
SEPAAAAPLPLAGKTFVLTGTLPTLSRDEAKSMLEEKGAKVAGSVSAKTDYVVAGADAGS
KLAKAESLGVPVLDEDAMRAMLAAL
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgacgatgcgacggtcggcgcgcagcgcgccgccgagctgcgtcgtgagttggcg
cgacacaatcgcgcctattacgaagaggacgccccgctgattcccgatgccgagtacgac
cgtctgttcgccgaactcgtcgcactcgaagcccgcttccccgaattgcagcgtgccgat
tcgcccacgcagcgcgttggcggcaagcctgtggaggggttcgctccggtcgtgcaccgt
gtgcccatgctgtcgctgaacaacggctttgccgacgaggacgtcgaggcgttcgatcgt
cgcgtgacggacgggctacgcgatggcaatgcggcgggtgcctcgggcgatctgttcggc
gcaccggtcgaatacgcggccgagctgaagttcgacggcctggcgatcgcgctgcgttac
gagcgcggtgtgctcgtgcaggcagccacgcgcggtgacggcacgaccggcgaggacgtg
accgccaacatccgcaccatcaagaagattccgctgcgcctggagacggacgatccgccc
gaagtgcttgaagtgcgtggcgaagtgctgatgttccgggctgacttcgacaagctcaat
cggatgcaggaagccgccggcgagaaggtcttcgtcaacccgcgcaatgcggcggccggt
agcctgcgccagctcgattcgagaatcaccgccaggcgcccgctgtcgttctttgcctat
gggatcggcgaactggttggcgcaccgatgcctcagacccattccgcgctgctcgattgg
tacgtcacactgggcattccggtcaacgaccgtcgcgaggtggtgcagggggcgcacgga
ttgctcgcgttctatcgaacggtgggcgaggcgcgcccgtcgctgccgtacgacatcgat
ggcgtggtctacaaagtcaaccgacgcgatgagcaggagcgcctcggcttcgtgtcacgc
gcgccgcgcttcgcactggcgcacaaatttcccgcgcaggaggcactcacgacgctgctc
gacatcgaggtgcaggtggggcgcacgggcgcgatcacgccggtggcgcgtctggcgccg
gtcttcgtgggcggggcgacggtgacgaacgccacgctgcacaacgaggacgaaattcgg
cgcaaggatgtcatgatcggcgacaccgtgattgtgcgccgtgcgggggatgtgattccg
gaggtggtcggttcggtgctggagcgacgtcctgccgacgcgcgggcgtttgtgatgccg
acggcgtgcccggtgtgcggttcggccatcgaaaagctgcccgacgaggtcatcgcgcgt
tgcacgggcgggttgatctgcgccgcgcagcgcaagcaggccttgctgcactttgcgcag
cgccgcgcgctcgatatcgaagggcttggcgacaaactcgtcgagcaacttgtcgaccag
cacatcattcgcacgccggccgacctgttcaagctcggcgtggccaagctggcggcgctc
gatcgcatggccgacaaatcggcggccaatctggtggcggcgctggaggcggcgcgtcac
actacactcgcgcgcttcatcttcgcactggggatccggcatgtgggtgaggcgacggcg
aaggatctcgcccgtcatttcggcacgctggacaatgtgatggcggcctcgaccgaggaa
ctgctcgccgtgcctgacgtcggacccattgtggcccagtccatcgccaatttcttcggt
gagccgcataatgtcgaggtgatcgagcaactgcgcgcggcgggcgtcacctggcccgag
tcggaaccggcggcggcggccccgttgccgttggccggcaagaccttcgtgctgacgggg
acgttgccgacgctttcgcgtgacgaggcgaaatcgatgctcgaggaaaaaggggcgaag
gttgccggttcggtttccgcgaaaaccgattatgtcgtggcgggagccgacgcagggagc
aagttggcgaaggccgagtcgctgggtgtgccggtgctcgacgaagacgctatgcgcgcg
atgttggccgcgctttga
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