Pandoraea pnomenusa RB38: DA70_18970
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Entry
DA70_18970 CDS
T03067
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
ppno
Pandoraea pnomenusa RB38
Pathway
ppno00300
Lysine biosynthesis
ppno00550
Peptidoglycan biosynthesis
ppno01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppno00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
DA70_18970
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
DA70_18970
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppno01011
]
DA70_18970
Enzymes [BR:
ppno01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
DA70_18970
Peptidoglycan biosynthesis and degradation proteins [BR:
ppno01011
]
Precursor biosynthesis
Amino acid ligase
DA70_18970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Methyltransf_18
LpxK
Motif
Other DBs
NCBI-ProteinID:
AHN76302
LinkDB
All DBs
Position
complement(4782820..4784358)
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AA seq
512 aa
AA seq
DB search
MIADAAQRAALAQAWDWLRRTVPAGANLHADSRRVMPGDVFVAYAVKGADSRGFIADAVE
RGAAAVVWQSDDFTWPASLASLGNVPQFGVPRLDWLAGPLAALWYGEPSVGMSMLGVTGT
NGKTSCSQWLAQLLSKAGTRSAVIGTLGSGFPGHLTVTGFTTPDAVQLQRSLADLRAQGA
AALAMEVSSHGLYQGRVNGVAFDIAVFTNLTQDHLDYHGTMAEYEAAKTRLFDWPGLKAA
VINRDDAMGQRLLARLAGKTPVIEYGVHGDATSAHGNRVLRAEDIRATTSGTRFTLHIDD
RSQQITVPLIGEFNVSNALAVLGAALAGGVSQDAAIAGLAALAPVSGRMEQIGQPGQPLV
VVDYAHTPDALDKTLDALRPVATARGGKLVCVFGCGGDRDAGKRPQMGAVAERLADAVVL
TSDNPRTEVPAEIMAQIAAGLANPDAVRRIEDRASAILQAVRGAQAADVVLIAGKGHEST
QEIMGKKRPFSDQEHARLALAARATTVRGGGE
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgatcgccgacgccgcgcagcgcgccgcgctcgcgcaggcctgggactggctgcgccgc
acggtgccggccggggcgaacctgcacgcggacagccgccgcgtgatgccgggcgacgta
ttcgtcgcgtacgccgtcaagggcgccgacagccgtgggttcattgccgacgcggtcgag
cgcggcgctgccgcggtcgtctggcaaagcgacgacttcacatggccggcgtcgcttgcg
agtctcgggaatgtgccccagttcggcgtgcctcgcctcgactggctggccggtccgctg
gcggcgctgtggtacggcgagccgagcgtcggcatgtcgatgctcggtgtgaccggcacg
aacggcaagacgtcgtgcagccaatggctcgcgcaactgctgtccaaggcaggcacgcgc
agcgccgtgatcggcacgctcggcagcggctttccgggccatctgacggtgaccggtttc
accacgcccgacgccgtgcaactgcagcgcagcctggccgacctgcgcgcgcaaggcgcc
gccgcactcgccatggaagtgtcgtcgcacggcctgtatcaggggcgcgtcaacggcgtg
gcgttcgacattgccgtatttaccaatctgacgcaggaccacctcgattaccacggcacg
atggccgagtacgaggcagccaagacgcgcctcttcgactggccgggcctgaaggccgcc
gtcatcaatcgtgacgacgcgatgggccagcgcctgctcgcgcgtctggccgggaagacg
ccggtcatcgaatacggcgttcacggcgacgccacgtcggcacacggcaaccgcgtgctg
cgcgccgaggatattcgggcgacgacgtccggtacacgcttcacgctgcacatcgacgac
cggagtcagcagatcacggtgccgctgatcggcgagttcaacgtgagcaatgcgctcgcc
gtgcttggcgcggcgcttgccggcggcgtatcgcaggacgccgcgatcgccgggctcgcc
gcgctcgcgccggtgtccgggcgcatggagcagatcgggcagccggggcaaccgctggtc
gtcgtcgactatgcgcacacgcccgacgcgctcgacaagacgctcgacgccctgcgtccg
gtggcgacggcgcgcggcggcaagctggtttgcgtgttcggctgcggcggcgaccgcgat
gcgggcaagcgtccgcagatgggcgcggtggccgagcgtctggccgacgcggtggtgctc
acgagcgacaacccgcggaccgaagtaccggccgagatcatggcgcagatcgccgccggt
ctcgcgaaccccgacgccgtgcgtcggatcgaagaccgcgccagcgcgatcctgcaggct
gttcgcggcgcgcaggcggccgacgtggtgctcatcgccggcaagggccacgaaagtaca
caggaaatcatgggcaagaagcggccgttctccgatcaggagcatgcgcgactggcactc
gccgcgcgcgcgacgactgtgcgcgggggaggtgaatga
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