Pectobacterium polaris: BJK05_16720
Help
Entry
BJK05_16720 CDS
T05195
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa03030
DNA replication
ppoa03410
Base excision repair
ppoa03420
Nucleotide excision repair
ppoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BJK05_16720
03410 Base excision repair
BJK05_16720
03420 Nucleotide excision repair
BJK05_16720
03430 Mismatch repair
BJK05_16720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppoa03032
]
BJK05_16720
03400 DNA repair and recombination proteins [BR:
ppoa03400
]
BJK05_16720
Enzymes [BR:
ppoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BJK05_16720
DNA replication proteins [BR:
ppoa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BJK05_16720
DNA repair and recombination proteins [BR:
ppoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BJK05_16720
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJK05_16720
MMR (mismatch excision repair)
DNA ligase
BJK05_16720
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BJK05_16720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
HHH_5
DUF3701
Motif
Other DBs
NCBI-ProteinID:
ASY81543
LinkDB
All DBs
Position
3813237..3814928
Genome browser
AA seq
563 aa
AA seq
DB search
MWLRIRTFLIIIVVGGISSFPTVAVVCPDWDNTRAGKEIDALRHQLEQWDDVYYTEGKSP
IEDDVYDQLRDQLNQWLGCFQPQNSIPVRLPDNGKQLHPVAHTGLKKLSDRRQLVQWIAQ
REDLWIQPKVDGVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKVRQIPGVPHLLIDAPSSL
VLQGELFLKMTDHRQRTQGGVNARSVVAGEMRRHQPSSVLSQIGLFVWEWPDGPKTMPER
LEKLKEMGFAMTADYTHAIGSFADAEKWRHHWYHNPLPFVTDGVVIRQTKEPQGRYWRNT
SADWAIAWKYPPVNQIAEVADVAFSVGRTGKIAVVLKLHPLKLDDKSVSRVNVGSLSRWK
QWDVLPGDRVSVSLAGQGIPRLDNVVWRGTERPAIVFPSEHDFHAFSCFRYSVVCQQQFL
ARLVWLSGEHGLNLAGVREGMWLRLIQHDLLEDVLSWLSLTEAQLNAVNGMGDKRARDIY
DSLQSARQMPLSRWLLALGIPVPRSAINALDDVDWLALQQWTAQQWRQFSGIGERRAEEI
MAFLKHPIVVELMTRLDREGIHR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtggctcaggatccgcacatttttgatcatcatcgtcgttgggggtatcagcagtttc
ccaactgtggctgtggtgtgccctgattgggataacacaagggctggcaaagaaattgat
gcattgcgtcatcagttagaacagtgggatgacgtgtattacaccgaagggaaaagcccg
atagaagatgacgtttatgatcagctgcgggaccagttaaaccagtggttaggctgtttt
cagccccaaaactcgattcccgtacggttacccgataatggcaagcagcttcatcctgtt
gctcatacgggactgaaaaaattgtccgatcgtcggcaactggtgcaatggatcgcacag
cgtgaggatttatggattcagccaaaagtcgatggtgtagccgtcacgctcgtctatcag
cacggcaagctcgtgtccgcggttagccggggtaacggcttgcagggtgaagactggacg
gaaaaagtccgccagattccgggagttcctcatctattaatcgatgcgccttcctcatta
gtattacaaggggaactattcctgaagatgaccgatcatcgacagcgtactcagggcggc
gttaatgcccgttcggtcgtggccggtgaaatgcgtcgtcatcagccatcttctgtgttg
tcgcaaattggtctgtttgtctgggaatggccggatggaccaaagacaatgcccgagcgt
ctggagaaattgaaggaaatggggtttgcgatgacggcggactatacccatgctattggg
tcattcgctgacgcggagaaatggcgtcatcactggtaccacaacccactgccttttgta
acggatggtgtggttatccgccagactaaagagccgcaggggcgctattggcgtaataca
tcagccgactgggcgatcgcatggaaatacccgcctgttaatcagattgcggaagtggct
gatgtggcgttttctgtcggacggacgggtaagatcgccgtggtgttaaaactccatcct
cttaaattggatgataaatcggtcagccgggtgaatgtgggctcgctgtctcgttggaaa
cagtgggacgtgttgcctggcgatcgggtgagcgtcagcctggcggggcagggaattcca
cgtctggataatgtggtatggcgtggcactgagcggccagccatcgtttttcccagtgaa
catgacttccatgcttttagctgttttcggtatagcgtggtttgccagcagcaatttctg
gcgcgcttagtctggttgagtggagagcatggattaaatctggcgggagtgcgtgaaggg
atgtggttgcgcctgatacaacatgatttactggaggatgtgctgtcatggctatctctg
acggaggcacagcttaatgcggtcaatggcatgggcgataagcgggcacgagatatctat
gatagcttacagtcggcacggcagatgccgttatcccgctggctgcttgcgctgggtatt
cctgttcctcgctccgccattaacgcattggatgatgtggattggctggcgttacagcag
tggacagcacaacagtggcgacagttctccggtattggagagcgacgtgcagaagagatt
atggcgttcctgaagcaccctatcgtggtggaattaatgacccgattagatcgtgaaggc
atacatcgataa
DBGET
integrated database retrieval system
