Peterkaempfera podocarpi: AB0761_13875
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Entry
AB0761_13875 CDS
T11007
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppod Peterkaempfera podocarpi
Pathway
ppod03030
DNA replication
ppod03410
Base excision repair
ppod03420
Nucleotide excision repair
ppod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB0761_13875 (ligA)
03410 Base excision repair
AB0761_13875 (ligA)
03420 Nucleotide excision repair
AB0761_13875 (ligA)
03430 Mismatch repair
AB0761_13875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppod03032
]
AB0761_13875 (ligA)
03400 DNA repair and recombination proteins [BR:
ppod03400
]
AB0761_13875 (ligA)
Enzymes [BR:
ppod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB0761_13875 (ligA)
DNA replication proteins [BR:
ppod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB0761_13875 (ligA)
DNA repair and recombination proteins [BR:
ppod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB0761_13875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB0761_13875 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB0761_13875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB0761_13875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
DUF7112
Motif
Other DBs
NCBI-ProteinID:
XHM91462
LinkDB
All DBs
Position
complement(3188730..3190958)
Genome browser
AA seq
742 aa
AA seq
DB search
MAGDGKVVDLTEVPAEVRERHSVLAQEIEEHRFRYYVKDAPVVSDAEFDALMRELEGLEE
QYTVLRTPDSPTQKVGGTYSNDFAEVAHLERMLSLDNAFTDEELDAWGERVARELGGQEY
HFLCELKVDGTAINLVYEHGRLVRAATRGDGRTGEDVTANVRTIAEIPDQLRTDGGHAVP
ELVEIRGEIYFPTEEFEQLNIARVAAGEDPYANPRNSASGSLRQKDPRVTATRPLHMVVH
GIGARRGFDIDCQSHAYDLLRAWGLPTARHNTVVRTLAEVKEFIAYFGEHRHSVEHEIDG
VVVKVDEIPLQGRLGATSRAPRWAIAWKYPPEEVNTKLLDIRVNVGRTGRCTPYAVMEPV
RVAGSVVEYATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPA
VCPECGTGLRPMSEGDIDLRCPNARSCPAQLRERIFYLAGRRCLDIEALGYVAATALTQP
LEPAQPPLTDEGDLFDLTIDQLLPIRVVVRDADTGLPKRDEKTGEEKVVAFFANLKGEPK
KTATALLENLQAVRERPLARIIAGLSIRHVGPVAAQALAREFRDLDRIAAASEAELAATE
GVGPTIAASIIQWFAEDWHREIIEKWRRAGVRFTEEAVEGEGSDLLAGLTVVVTGTLASH
TRDGAKEALVSRGAKVTGSVSKKTAFVVVGENPGSKHDKAVQLGLPVLDDEGFAVLLEQG
PDAARAHLGLPAADGGESEAQD
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
gtggccggtgacggcaaggtcgtggacctgacggaggtgcccgcggaggtccgtgagcgg
cactccgtgctggcgcaggagatcgaggagcaccgcttccggtactacgtcaaggacgcc
cccgtcgtcagcgatgccgagttcgacgcgctgatgcgggagttggagggactggaggag
cagtacaccgtgctgcgcaccccggattcccccacccagaaggtcggcggcacctactcc
aacgacttcgccgaggtcgcgcatctggagcggatgctcagcctggacaacgccttcacc
gatgaggagctggacgcctggggcgagcgcgtcgcccgcgagctgggcggccaggagtac
cacttcctgtgcgagctcaaggtggacggcaccgcgatcaacctggtgtacgagcacggc
cggctggtccgtgccgcgacccggggcgacggacgcaccggtgaggatgtcaccgccaac
gtccgcaccatcgccgagatccccgaccagctccgcacggacggcggccacgccgtgccc
gagctggtggagatccgcggcgagatctacttccccaccgaggagttcgagcagctcaac
atcgcccgggtcgccgccggcgaggatccctacgccaacccgcgcaactccgcctccggc
tcgctgcggcagaaggaccccagggtcaccgccacccggccgctgcacatggtggtgcac
gggatcggtgcccggcgcgggttcgacatcgactgccagtcgcacgcctatgacctgctg
cgggcctgggggctgcccaccgcccggcacaacacggtggtgcgcacccttgccgaggtc
aaggagttcatcgcctacttcggcgagcaccggcactccgtggagcacgagatcgacggt
gtggtggtcaaggtcgacgagatcccgttgcagggccggctcggcgccacctcccgtgcc
ccgcgctgggccatcgcctggaagtacccaccggaggaggtcaacaccaagctgctggac
atccgggtcaatgtcggccgcaccgggcgctgcaccccgtatgcggtgatggaacctgtg
cgggtggccgggtccgtggtggagtacgccaccctgcacaaccaggacgtggtcaaggcc
aagggcgtgctcatcggtgacacggtggtgctgcgcaaggccggcgacgtcatcccggag
atcctcggcccggtcgtcgacctccgggacggcaccgagcgggagttcgtgatgcccgcc
gtctgcccggagtgcggcaccgggctgcgtccgatgtccgagggcgacatcgacctgcgc
tgtcccaacgcccgctcctgcccggcccagctgcgcgagcggatcttctatctggcaggg
cgccgctgcctggacatcgaggcactcggctatgtcgcggccaccgcactcacccagccg
ctggagcctgcgcagccgccgctcaccgatgagggagacctcttcgacctgaccatcgat
cagctgctgccgatcagggtcgtggtccgcgacgccgacacaggcctgcccaagcgggac
gagaagaccggtgaggagaaggtggtcgccttcttcgccaacctcaagggcgagcccaag
aagaccgccaccgcgctgctggagaacctccaggcggtcagggagcggccgctcgcccgg
atcatcgccggactctccatccgccatgtcggtccggtggctgcccaggcactggccagg
gagttccgtgacctggaccggatcgccgcggcgagcgaggcggagctcgccgccaccgag
ggcgtcgggccgaccatcgccgcctccatcatccagtggttcgccgaggactggcaccgc
gagatcatcgagaagtggcgccgggccggcgtccgcttcaccgaggaggcagtcgaaggg
gagggctcggacctgctcgccggcctcaccgtggtggtcaccggcaccctcgcctcgcac
acccgcgacggcgccaaggaggccctggtctcccggggggccaaggtcaccggatcggtc
tccaagaagaccgctttcgtggtggtcggcgagaaccccggctccaagcacgacaaggcc
gttcagctgggcctgccggtgctggacgacgaagggttcgcggtgctgctggagcagggg
ccggacgccgcccgcgcccacctcgggctgcccgcggcagacggcggcgagagcgaggcg
caggactga
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