Pollicipes pollicipes (gooseneck barnacle): 119091489
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Entry
119091489 CDS
T08250
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119091489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoi03400
]
119091489
Enzymes [BR:
ppoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119091489
DNA repair and recombination proteins [BR:
ppoi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119091489
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119091489
NCBI-ProteinID:
XP_037070185
LinkDB
All DBs
Position
Unknown
AA seq
830 aa
AA seq
DB search
SAHTLLRLVLPQLDRLRGPYGAKERRLADLADADRLRRLGSDGGTQQGGGDFAQTVFHVL
RDRCRADSSGWSMQDVDSRLTQLAERHQSSDVAGVKAVMDELVRSLSAREQLWLVRIILG
EMQLGVGSTALLNAFHPDAAEHYGVTCSLLRVAADLAEPAERRAGPAGRRPRTGVTLFTP
FKPMLSERSGLGSVDKQMRHKPFFVEPKHDGERVQLHKDGEKYMFFSRGGFDFTASYGAS
PAAGSLVPHIHPQFNASVRSCILDGEMLVWNDIERRVIVKAEAPDVKKLRPGGRLRPLFV
PFDLVYFNGEQLTDRPLSERLSKLKSVFRPLEGRLDVNTRIEASTAEEVVKALNEAIDRQ
EEGLILKDPTSMYWPNERRKGWAKVKPDYVNSLVDDLDMVIIGGYWGKGARRGTVCQFLL
GAAEPPERDGEHPQVFLSAGCVSSGITDQQLHQLLQQLMPHMQRTRRDGRPPPSLRWTRE
KPDLYIEPSLSRVLQVKATELVESSSHAAGLVPRFARVVSARTDKAWHECVTTTELRQLR
ERAGGKLAAGHLQSVPERAPAARRTVAPSLPAHLRPADLRDVRPASTRLAGRQLCVMTCD
GPGAKQELERLIHGLGGSLTQNPTSDTWCVIADRVAVKERSVIASGRCDVVRSAWVRRAG
SGRRLPPFAPAEILHQTPATALTTQLHYDQHGDSYAEDVDGDQLRALLQGMPSEPRPLPS
PPPELTALFEHAPFSLLAGCRCFLAPPLHGATVAGLLLRLHGARLALQLDNDVSHVVTAG
DTDELRTQNRLRSRKFHLVSERWVEESIAQGRWADERAFPPGSCLVVPRP
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
tctgcgcacacgctgctgcgcctggtgctgccgcagctggaccggctgcgcggcccgtac
ggcgccaaggagcgccggctggctgacctcgccgacgcggaccggctacggcggctgggc
tccgacggaggcacgcagcagggcggcggcgacttcgcgcagacggtgttccacgtgctg
cgggaccgctgccgggccgacagcagcggctggagcatgcaggacgtggacagtcggctg
acgcagctggctgagcgtcaccagtcgtcggacgtggccggtgtgaaggccgtcatggac
gagctggtgcgctcactgtcggcccgagagcagctgtggctggtccgcatcatcctgggt
gagatgcaactgggcgtgggcagcacggccctgctgaacgccttccacccggacgcggcc
gagcactacggcgtcacgtgcagcctgctgcgggtggccgccgacctggccgagccggcc
gagcggcgcgccggcccggccgggcgtcgtccgcgcaccggcgtcaccctcttcacgccg
ttcaagccgatgctgtccgagcgctccggcctggggtcggtcgacaagcagatgcgtcac
aagccgttcttcgtggagcccaagcacgacggcgagcgcgtgcagctgcacaaggacgga
gagaagtacatgttcttctcccgtggcgggttcgatttcaccgccagctacggcgcctcg
ccggccgccggctcgctggtgccgcacatccacccgcagttcaacgcctctgtccgctcc
tgcatcctggacggcgaaatgctggtctggaacgacatcgaacgacgagtaatcgtcaaa
gccgaggcgccggacgtgaagaagctgcggcctggcggccggctccgcccgctgttcgtt
ccgtttgacctggtctacttcaacggcgagcagctcacggaccggccgctcagtgagcgt
ctgagcaagctcaagtccgtatttcggccgctagagggcagactagacgtgaacacgcgc
attgaggcgtcaacggcggaggaggtggtgaaggccctgaacgaggccatcgaccgtcag
gaagagggcctgatcctcaaggatcccacatcgatgtactggcccaatgagcggcgtaag
ggctgggcgaaggtcaagcctgactacgttaattcgctggtggacgacctggacatggtc
atcattggagggtactggggcaagggtgcgcggcgggggacagtctgtcagttcctgctg
ggcgctgccgagccaccggagcgggacggcgagcatccgcaggtgttcctctcggccggc
tgcgtgagctcaggcatcacggaccagcagctgcatcagctgctgcagcagctgatgccg
cacatgcagcggacccggcgggacggccggccgccgccctctctgcgctggacgcgagag
aagccggacctgtacatcgagcccagcctcagccgggtgctgcaggtgaaggccacggag
ctggtggagtcgtcgtcgcacgcggccggcctggtgccgcggttcgcgcgcgtcgtcagc
gcgcggacggacaaggcgtggcacgagtgtgtcaccaccactgagctgcgacagctgcgc
gagcgcgccggcggcaaactggccgccggacacctccagtcggtaccggagcgggccccg
gctgcgcggcgcacagtggcgccctctctgccggcgcacctgcggccggcagacctcagg
gacgtgcgacccgcctccacccgcctggccggccgccagctctgcgtcatgacctgcgat
ggccccggggccaagcaggagctggagcggctgatccacggtctgggcggcagtctgacg
cagaaccccaccagcgatacgtggtgcgtcatcgctgatcgcgtcgctgtcaaggagcgg
agtgtgattgccagtggccgctgtgacgtcgttcgctcggcctgggtgcgccgggctggc
tccggccgccgcctgccgccgttcgctccggccgagatcctgcaccagacaccggccacg
gcgctcaccacccagctgcactacgaccagcacggcgacagctacgctgaggacgtggac
ggcgaccagctgcgcgccctgcttcaggggatgccgtccgagcccagaccgctgcccagt
cctccgccagagctgaccgcgctcttcgagcacgcgcccttctcgctgctggccgggtgc
cgctgcttcctggcgccaccgctgcacggcgccaccgtcgccggtcttctgctgcggctg
cacggcgctcggctggcgctccagctggacaatgacgtcagtcatgtggtcaccgccggg
gacacggatgagctgcgcacgcagaaccgcctccggtcgcgtaagttccacctggtttcg
gagcgctgggtggaggagagcattgcacagggtcgatgggcggacgagcgtgccttcccg
ccaggctcctgcctagtggtgccgcggccctga
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