Pectobacterium polonicum: LW347_21390
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Entry
LW347_21390 CDS
T08488
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppoo
Pectobacterium polonicum
Pathway
ppoo03030
DNA replication
ppoo03410
Base excision repair
ppoo03420
Nucleotide excision repair
ppoo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LW347_21390 (ligB)
03410 Base excision repair
LW347_21390 (ligB)
03420 Nucleotide excision repair
LW347_21390 (ligB)
03430 Mismatch repair
LW347_21390 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppoo03032
]
LW347_21390 (ligB)
03400 DNA repair and recombination proteins [BR:
ppoo03400
]
LW347_21390 (ligB)
Enzymes [BR:
ppoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LW347_21390 (ligB)
DNA replication proteins [BR:
ppoo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LW347_21390 (ligB)
DNA repair and recombination proteins [BR:
ppoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LW347_21390 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LW347_21390 (ligB)
MMR (mismatch excision repair)
DNA ligase
LW347_21390 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LW347_21390 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
HHH_5
DUF3701
HHH
TetR_C_31
Motif
Other DBs
NCBI-ProteinID:
UVO08346
LinkDB
All DBs
Position
complement(4749012..4750763)
Genome browser
AA seq
583 aa
AA seq
DB search
MWLRICTFLIISVVGGISGFSAAAEACPAWDNTRSNKEITALRQQLARWDDVYYIEGKSP
VADDVYDQLREQLNQWVGCFQPQNAISARLPDNGKQRHPVAHTGLKKLSDREQLVYWIAQ
RKDLWVQPKVDGVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLTEAPSSL
VLQGELFLKMTDHRQRTQGGVNARSVVAGEMRRHQPSPVLSQIGLFVWEWPDGPKTMPER
LKKLQEMGFAMVAEYTHAIGSFADAEKWRHYWYSNPLPFVTDGVVIRQTKEPQGRYWRNT
SADWAIAWKYPPVHQVAEVTDVAFSVGRTGKIAVVLKLNPLKLDDKLVSRVNVGSLSRWK
QWDVLPGDRVSVSLAGQGIPRLDNVVWRGTERPAITPPSEHDFHAFSCFRYSAVCQQQFL
ARLVWLSGEHGLNLAGMSDGMWLRLMQHNLLGDVLAWLSLTETQLSAVNGIGVKRARDIY
TSLQSARQEPLSRWLLALGIPVPRSAMSALDHVDWLALQQRTIQQWRHFSGIGERRAEEI
MAFLNHPIVVEFIARLRREGIYTPNNSSCRKAAREGVPMSLLR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtggctcaggatttgcacttttttgatcatcagcgttgttgggggcatcagtggtttt
tcggctgcggctgaagcctgtcccgcttgggataacacgcgttcgaacaaagaaattact
gcattgcgtcagcagttagcacggtgggatgacgtgtattacatcgaagggaaaagccca
gtagcagatgatgtttatgatcaactgagggagcagttaaaccagtgggttggctgcttt
cagcctcaaaatgcgatttctgcccgcttacccgataatggcaagcaacgtcatcctgtt
gcccatacggggttgaaaaaattgtccgaccgcgagcaattggtgtactggatcgcacag
cgtaaggatttatgggttcagccaaaagttgatggtgtggctgtcacgttggtctatcag
cacggcaagctcgtgtccgcggttagccggggtaatggcctgcaaggcgaagactggact
gaaaaagttcgtctgattccgggaatccctcatttactaaccgaagcaccttcctcgtta
gtattacaaggagagcttttcctaaagatgaccgatcatcgacagcgtactcagggggga
gttaatgcacgttcggtcgtggcgggtgaaatgcgtcgtcatcagccatctcccgtgttg
tcgcagattggcttgtttgtctgggaatggccggatggcccaaagacgatgccagaacgt
ctgaaaaaattgcaggaaatgggatttgccatggtagcggagtatacccatgccattggg
tcattcgccgatgcagagaaatggcgtcactactggtatagcaacccgttgcccttcgtg
acagatggcgtggttatccgccagactaaagaaccgcaaggccgttattggcgtaacacg
tcggccgactgggcgatagcgtggaaatatccgcccgttcatcaggttgcggaagtcacc
gatgtggcattttctgtcgggcggacgggtaagatcgccgtggtattaaaacttaaccct
ctgaaactggatgataaattggtcagtcgagtgaatgtgggttctctgtctcgttggaaa
caatgggatgtgttgcccggcgatagagttagtgtcagcctggcggggcaggggattccg
cgtctggataatgtggtatggcgtggcactgagcggccagctataaccccgcccagtgaa
catgatttccatgcttttagctgttttcgctatagtgcagtgtgtcagcagcaatttctg
gcgcgcttagtctggctgagtggggagcacggtttaaatctggcgggcatgagtgacggg
atgtggttgcgcttgatgcaacataatttactgggggatgtactggcgtggttatctctg
acagagacacagcttagcgcagttaatggcatcggggtgaagcgggcacgagatatctat
acgagcttacagtcggcacggcaggagcctttatctcgctggttacttgcgttgggtatt
cctgttccccgctcagcgatgagcgcattggatcatgtggattggctggcgttacagcaa
cggacgatacagcagtggcgacatttttcgggcattggagagcggcgtgcagaagaaatt
atggcgttcctgaatcaccccatcgttgttgagttcattgcccgattgcgtcgcgagggt
atatataccccaaataattcgagttgcaggaaggcggcaagagagggagtcccgatgagc
ttactcaggtaa
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