Pseudodesulfovibrio portus: JCM14722_00430
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Entry
JCM14722_00430 CDS
T08636
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppor
Pseudodesulfovibrio portus
Pathway
ppor03030
DNA replication
ppor03410
Base excision repair
ppor03420
Nucleotide excision repair
ppor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JCM14722_00430 (ligA)
03410 Base excision repair
JCM14722_00430 (ligA)
03420 Nucleotide excision repair
JCM14722_00430 (ligA)
03430 Mismatch repair
JCM14722_00430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppor03032
]
JCM14722_00430 (ligA)
03400 DNA repair and recombination proteins [BR:
ppor03400
]
JCM14722_00430 (ligA)
Enzymes [BR:
ppor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JCM14722_00430 (ligA)
DNA replication proteins [BR:
ppor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JCM14722_00430 (ligA)
DNA repair and recombination proteins [BR:
ppor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JCM14722_00430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JCM14722_00430 (ligA)
MMR (mismatch excision repair)
DNA ligase
JCM14722_00430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JCM14722_00430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BDQ32501
LinkDB
All DBs
Position
46962..49016
Genome browser
AA seq
684 aa
AA seq
DB search
MISSAAAERAAYLREKLEYHNHRYYVLDAPEITDAEYDELFRELAAIETAHPELDDPNSP
TKRVGGKPAAGFTPYEHAVRMYSLDNGMDLEAWRGFAERVAKGVGTSDISYWTDPKMDGL
AMEAIYENGRFVRAATRGDGMVGEDVTHNMRTVMNLPLTLHNANPPELLEVRGEVVISNK
DFAALNARQAEAGEKVFANPRNAAAGSIRQLDPKVAASRPLRFMAYGIGRVEWDGDSSPW
ATQQSIVEGVQELGFAVAPEARLCASSREVADYFQQLMAERAGLPFEIDGVVAKVNDLEM
QRALGFTSRAPRWALALKFPAHQTSTRLNNIRIQVGRTGVLTPVAELEPVELAGVVVSSA
TLHNKGYIGERDFRIGDTVLIQRAGDVIPQVLSVDLEKRPESAVSYPFPMQCPVCHSPAV
EDGERVICTNPTCPAKTVQRIIHFVSKAGLDMEGVGKQWVRKLAEDGVLNSPADLFTLQK
TALLKYGGMGDKSAENFIKAIHKARHDAPLWRLIAGLGIRHVGEQTARTLADNFEDLAAI
GKVTREELQELEDVGPIVAESLYDYFHSPEADELFARFKEADFWPKGGVKAAEAASGLPL
AGKVFLFTGTLPVKRDEAQAMVEALGGVAAKAISRKVDYLVAGEKAGSKVAKAEKLGVEI
IDFEAFQALLQGMPKAKPKSLLDF
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgatttcttcagccgctgcagagcgcgcagcttatctgcgtgaaaaacttgagtaccac
aaccaccggtattacgttcttgacgctcctgagatcaccgacgccgaatacgacgaattg
ttccgcgagttggcggccattgagacggctcacccggaactggacgatcccaactccccg
accaaacgtgttggcgggaaacccgcagcgggttttacgccctatgaacatgccgtccgc
atgtactccctggacaacggcatggacttggaagcgtggcgcggttttgccgagcgcgtg
gccaagggagtggggaccagtgacatttcctactggaccgatcccaagatggacggtctg
gccatggaggcgatttacgagaacgggcgattcgtccgggcggccacgcgcggcgacggc
atggtgggcgaggacgtgacccacaacatgcgcacggtcatgaatctgccgctgacgctg
cacaacgccaaccctccagaactgttggaggtccgtggcgaagtggtcatttccaacaag
gattttgcggccctgaacgcgcgccaggccgaggccggggaaaaggtctttgccaatcct
cgcaatgccgctgcgggctccatccgtcagctcgaccccaaggtggcggcatcgcgcccc
ctgcgcttcatggcctatggcatcggccgggtggagtgggacggcgactcctcgccgtgg
gccactcagcaatccatcgtggaaggggtgcaggaattgggtttcgcggttgcgcccgag
gcgcggctttgcgcgtccagccgggaagtggccgattatttccagcagctcatggccgag
cgggccgggctgccctttgagatagacggcgtggtggccaaggtcaacgacctcgagatg
caacgggcattgggctttacttcccgcgccccgcgctgggccctggccctcaagtttccg
gcccaccagaccagtacgcggttgaacaacatccgcatccaggtggggcggaccggagtg
ctgaccccggtggccgaactggaacccgtggaactggcgggcgtggtggtttccagcgcc
accctgcacaacaagggatacatcggggagcgggatttccgcatcggggacacggtcctc
attcagcgcgccggggacgtcatcccgcaggtgctgtccgtggaccttgaaaagcggcct
gaatccgctgtctcctacccgtttcccatgcagtgtcccgtgtgccacagcccggccgtc
gaggacggcgagcgtgtgatctgcaccaatcccacctgtccggccaagaccgtgcagcgg
atcattcatttcgtgtccaaggcggggctggacatggagggcgtgggcaagcagtgggtg
cgcaagctggccgaggacggggtgctgaactcgcccgccgacctgttcactctgcagaag
accgcgctcctcaaatacggaggcatgggcgacaagtccgccgagaacttcatcaaggcc
attcacaaggcgcggcacgatgcgccgctctggcggctcatcgccgggctgggcatccgt
catgtgggagagcagacggcccgcacgctggccgacaatttcgaggacctggccgccatc
ggcaaggtgacccgcgaggaattgcaggagctggaagacgtcggccccatcgtggcggag
agtttgtacgactattttcacagtcctgaggccgatgagctgttcgcccggttcaaggag
gcggacttctggcccaagggcggcgtcaaggccgccgaggccgcatccggcctgcctttg
gcgggcaaggttttcctctttaccggcacgctgccggtcaagcgcgacgaggcgcaggcc
atggtcgaggcgttgggcggggtggccgcgaaagccatctccaggaaggtggattacctg
gtggctggtgaaaaggccgggtccaaggtggccaaggccgaaaagctcggggttgaaatt
attgacttcgaggcgtttcaggctttacttcaaggcatgccgaaagcaaagccgaagtct
ttgctggacttctaa
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