Physcomitrium patens (spreading earthmoss): 112278359
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Entry
112278359 CDS
T01041
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112278359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112278359
Spliceosome [BR:
ppp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112278359
Complex C
U5 SnRNP specific factors
112278359
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
MMR_HSR1
EFG_III
Roc
EF-G_D2
Ras
Motif
Other DBs
NCBI-GeneID:
112278359
NCBI-ProteinID:
XP_024367476
UniProt:
A9TEJ6
LinkDB
All DBs
Position
27:3633795..3639636
Genome browser
AA seq
982 aa
AA seq
DB search
MDESLYDEFGNYIGPELDSDEEGSEQEEEEDEQRGLENGHDDGFLENGVDDDRDDAMDTE
GAVVLAEDKKYYPTAMEVYGEGVETLVMDEDAQPLEEPIIKPINLKKFEVVAREVQSYVA
TEFLLGLMHNPTLIRNVALIGHLHHGKTLMMDMLFQQTHAVNTLDPNSEKHLRYTDTRID
EQERQISIKTVPMSLVLEDSAGKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLVVDAVE
GVMVNTERSIKHAMQESLPIVVVINKVDRLITELKLPPTDAYHKIRHTLEEINNLVSLYS
SGVDGVPLIDPVYGNVCFASATAGWSFTLLSFAKLYVKLHGIPFDAAKFATKLWGDTYYH
PDTRTFKKKPPSGGGERAFVQFILEPLYKIYSQVIGEHRRSVENTLAELGVTLSNAAYKL
NVKPLLKLACSAVFGSGTGFTDMLVKHIPSAKDAAVTKVEHTYTGPQDTELAQSMRDCNA
TGPLMVNVSKLYPKPDCSVFDSFGRVISGTIRTGQSVRVLGEGYSPDDEEDMAVKEVTKL
WVYQARYRIPVTEAPAGSWVLIEGVDASIIKTATLCNEYYDEDVYTFRPLQFNTLSVVKT
ATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGEIFLDSIMKDLRELYSE
VEVKVADPVVSFCETVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIESGVVSLDWP
RKRLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKGLLNSVKDSIVQGF
QWGAREGPLCDEPIRNVKFKILDATIAQEPLHRGGGQIIPTSRRVAYSAFLMAAPRLMEP
VYFVEIQTPADCMSAIYTVLSRRRGHVTADIPKPGTPAYIVKAFLPVIESFGFETDLRYH
TQGQAFCVSVFDHWSIVPGDPLDKSVLLRPLEPAPVQHLAREFMVKTRRRKGMSEDVSIN
KFFDDPMLLELARQDADLQQIL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagcttgtatgatgagtttggtaactatattggacctgagctagattcggac
gaggaaggctctgagcaggaggaggaggaggatgagcagagaggattagagaatggacat
gatgatggatttttggagaacggggttgacgatgacagggacgatgccatggatactgag
ggggcagtggtgctggcggaggacaaaaagtattaccccactgccatggaagtgtatggc
gagggcgtggagacgttggtcatggacgaggatgcgcagcctctcgaagagcccatcatt
aaacctattaatcttaagaagtttgaggtggtggcgagggaggtgcagtcttatgttgct
acggaatttttattaggtctgatgcataatcccacgttaataagaaacgtggctttgata
gggcacctacatcacgggaaaaccctgatgatggacatgctgtttcaacaaacgcacgct
gtgaacactttagaccctaacagcgaaaagcatctgcggtacacggacactaggatcgat
gagcaagagcgtcaaatatcaattaagaccgttccgatgtctctcgtgttggaagacagt
gcgggaaaatcttacttgtgcaatataatggacacgccaggccatgtgaacttctcagac
gaaatgactgcagctcttcgtctcgcagatggagcagttcttgttgttgacgcagttgaa
ggtgtcatggtcaatacggagagatcgatcaaacatgctatgcaagagagccttcctatt
gtggtggttatcaataaggttgataggttgattacagaactcaagctgcctcctacagat
gcatatcacaagattcgtcataccttggaggagatcaataatcttgtatctctgtattca
tctggagtggatggagtgccattgattgatccagtgtacggaaacgtctgctttgcaagt
gcaactgccgggtggtcattcacgctcttatcatttgctaagctttatgtcaagcttcat
ggaattccatttgatgctgcaaaatttgctacaaagctttggggtgacacttattatcat
ccggatactcgtacattcaagaagaagccgccttctggtggaggagagcgtgcgtttgtg
cagtttattttggaaccactatataagatttacagtcaggtgatcggtgaacatcggcga
agcgtggaaaacactttagcagagctaggagtcactctaagcaacgctgcgtacaagctc
aatgtgaaacctctgcttaagctagcatgcagtgcagtttttggatcagggaccggtttc
acagacatgctggttaaacacatcccgtctgccaaagatgctgctgttaccaaagtggag
cacacttatactggccctcaggatactgaactggctcaatcgatgcgagactgcaacgca
actggacctctgatggttaatgtgagcaagctttacccaaaacccgattgtagtgttttt
gattcttttggaagagtcataagtggtactattcgtactgggcaatctgtacgagttctt
ggggagggctattcacctgatgatgaagaagacatggccgtcaaggaagtaacgaagctt
tgggtttatcaagctcgctaccgtattccagtcacggaggccccagcgggatcctgggtg
ctcatcgaaggagtggatgcttcgattatcaagacagcaaccctttgcaatgagtactat
gacgaagatgtatacacattccgtccgttacagtttaatactctctcagtggtgaagact
gcgactgagcctctaaatcctagtgagttacctaaaatggtggaaggtcttcggaagatc
agcaagagttatccacttgcgatcacgaaagttgaagagtcgggtgagcatacaatattg
ggcactggcgaaatatttttggactctattatgaaggacttacgtgagctctactcagaa
gtagaagttaaagtggccgatccagtcgtttccttttgtgagactgtagtggagacatcc
tccttgaaatgctttgctgagacgccaaacaagaaaaacaaattgactatgatagcagag
cctctagagaaggggttagcggaggacatcgaaagtggagtcgtatctttagactggcct
cggaagcggttgggtgattttttccagaccaaatatgactgggatcttttagcagcacgg
tctatttgggcctttggtccagataaacaaggtccaaatattttgctggatgatacacta
cctagtgaagtggataaaggccttttaaattctgtgaaagacagcatcgttcaagggttt
cagtggggagcacgagaaggacccttgtgtgatgaacctattcgcaacgtgaaattcaaa
attctggatgccactattgcccaagaaccgctacatcgtggtggcgggcagattattcca
acctctcgacgtgtcgcatactcggcttttctcatggcagctccccggttaatggaacca
gtctactttgtagagatacaaacacctgcagattgcatgtctgcaatctacacggtcctg
tctaggagaagagggcatgtcactgcagatataccaaaacctggtactccagcatatatc
gttaaggcatttttgccagtaattgagtcatttggttttgaaactgatctgcgctaccac
acacaagggcaagctttttgtgtttcggtctttgaccattggtcgattgtaccgggtgac
ccgctagacaagtcagttttgctgcgcccactagagcccgccccggttcaacacttggcc
cgtgaatttatggttaaaaccaggcgtaggaagggtatgagtgaagatgtgagtatcaac
aagttcttcgatgatcccatgcttttggagctcgcacgacaagatgctgatttgcaacag
attctttag
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