Physcomitrium patens (spreading earthmoss): 112283928
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Entry
112283928 CDS
T01041
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112283928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112283928
Spliceosome [BR:
ppp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112283928
Complex C
U5 SnRNP specific factors
112283928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
112283928
NCBI-ProteinID:
XP_024379105
UniProt:
A9STM2
LinkDB
All DBs
Position
6:19176577..19182560
Genome browser
AA seq
982 aa
AA seq
DB search
MDDSLYDEFGNYIGPELDTDEEDSEQEEEEDEQRGLENGHDDGYLENGIDDRGDDAMDTE
GAVVLAEDKKYYPTAMEVYGEGVETLVMDEDAQPLEEPIIKPINLKKFEVVAKEVQTYVS
TEFLIGLMANPTLIRNVALIGHLQHGKTLMMDMLFQQTHAVNTLDPTSEKHLRYTDTRID
EQERQISIKTVPMSLVLEDSAGKSYLANIMDTPGHVNFSDEMTAALRLADGAVLVVDAVE
GVMVNTERSIRHAMQEGLPVVVVINKVDRLITELKLPPTDAYHKLRHTLEEINNLISLYS
SGVDGVPLIDPMIGNVCFASATAGWSFTLLSFAKLYVKLHGIPFDPAKFASKLWGDTYYH
PDTRTFRKKPPPGGGERAFVQFILEPLYKIYSQVIGEHRKSVERTLAELGVTLSNAAYKL
NVKPLLKLACSSVFGSGTGFTDMLVKHIPSAKDAAVTKVEHTYIGPQDTELAQSMRDCNA
AGPLMVNVTKLYPKADCSLFDSFGRILSGTIRTGQCVRVLGEGYSPDDEEDMAVKEVTKL
WVYQARYRIPVTEAPAGSWVLIEGVDASIIKTATLCNEFHDEDVYIFRPLQFNTLSVVKT
ATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGEIFLDSIMKDLREMYSE
VEVKVADPVVTFCETVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIESGVVSLDWP
RKRLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKGLLNSVKDSIVQGF
QWGAREGPLCDEPIRNVKFKILDAAIAQEPLHRGGGQIIPTSRRVAYSAFLMATPRLMEP
VYFVEIQTPADCMSAIYTVLSRRRGHVTADVPKPGTPAYIVKAFLPVIESFGFETDLRYH
TQGQAFCVSVFDHWSIVPGDPLDKSVVLRPLEPAPVQHLAREFMVKTRRRKGMSEDVSIN
KFFDDPMLLELARQDADLQQIL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagcttgtatgatgagtttggaaactacattgggccggagttggacacagac
gaggaggactctgagcaggaggaggaagaagacgagcagagaggattagagaatggacat
gatgatggttatttggagaatgggattgacgaccgtggggacgatgccatggataccgag
ggggcggtggtgctggcggaagacaagaagtattatcccactgccatggaagtgtacggc
gagggggtggagacgttggttatggacgaggacgcgcaacctctcgaagaacctatcatt
aaacctatcaacctgaagaagtttgaggtggtagcgaaggaggtgcagacatatgtatcg
acggaatttttgataggattgatggcaaaccctacgttgatcaggaatgtggcattgata
gggcatttgcagcacgggaaaacgttgatgatggacatgttgttccaacaaacccacgct
gtgaacacattggaccctactagcgaaaagcacttgcggtacacggacactaggatcgat
gagcaagagcgtcaaatatcaatcaagaccgttcctatgtcgcttgtgttggaagacagt
gcgggaaaatcatacttggccaatataatggacacgccgggccacgtgaacttctcagat
gaaatgaccgctgctcttcgcctcgcggatggcgcagttcttgttgttgatgcagtcgaa
ggtgttatggttaatacagaaagatcaatcaggcatgctatgcaagagggacttcctgtt
gtggttgttattaataaggttgatcggttgattacagagctgaagctacctcccacagat
gcatatcacaagcttcgtcatacccttgaagagatcaataacctcatatccctatattca
tctggtgtggacggggtgccattaattgatccaatgattggaaacgtgtgctttgcaagt
gccactgctgggtggtcgtttacgcttttgtcatttgctaaactctacgtcaagcttcac
gggattccttttgatcctgctaagtttgcttcaaaactttggggtgacacttattaccat
ccggatactcgtacatttaggaaaaaaccccctcctggtggaggagagcgtgcatttgtg
cagttcatattggaacctctgtacaagatctatagccaggtgatcggggagcatcgtaag
agtgtggaaaggactttggcagagctgggagttaccctaagtaatgcggcatacaagcta
aatgtgaaaccacttcttaagctagcatgcagttcagtttttggatctgggacaggtttt
actgacatgctggtgaagcacatcccttcagctaaagatgctgcggttacgaaagttgag
cacacctatattggccctcaagatactgaacttgcacaatctatgcgcgactgcaacgcg
gcgggaccattgatggtcaacgtcaccaagctttacccgaaagctgactgcagccttttt
gattcatttgggagaatattaagtggtaccatccgcacggggcaatgtgtgagggttcta
ggtgaaggttattctccagatgatgaagaagatatggctgttaaggaagtcaccaaactt
tgggtttatcaagctcgctaccgcattccagtgacggaagctccagcggggtcctgggtt
ctcattgaaggagtcgatgcttcaattatcaaaacagcaactctttgcaatgaatttcat
gatgaggatgtatatattttccgtccattacagttcaatactctctcagtggtgaagact
gcgactgagcctctcaatcccagtgagcttcctaaaatggtggaaggactccggaagatt
agcaagagttacccactcgctatcaccaaggttgaggagtcgggggagcatacaatattg
ggcactggcgaaatattcctggactctattatgaaagatctacgtgaaatgtactcagaa
gtagaagtcaaagtggccgatccagtcgttactttttgtgagactgtggtggagacgtcc
tctttgaagtgttttgctgagacgccaaataagaaaaacaaattgactatgatagctgag
ccgttagagaaggggctagcagaagacatcgaaagtggagtagtatcattagactggcct
cgaaagcgtttgggtgattttttccaaacaaagtacgactgggatcttttagcagcccgg
tcaatttgggccttcggtccagataaacagggaccaaacattttgctggacgatacatta
ccaagtgaagtggacaaaggccttctgaattctgtgaaagattctattgtccaagggttt
caatggggagctcgtgaaggacctctgtgtgatgaaccaatacgcaatgtgaagttcaaa
attctagatgccgctatagctcaagagccactacatcggggcggtggccagataattcca
acctctcgacgtgttgcatactcagctttccttatggcgactccccggctcatggagcct
gtctattttgtggagattcaaacacccgcagattgcatgtcagcaatctacactgtcctt
tcgaggagaagagggcatgtcactgcagatgtaccgaaacccggcactccagcatatatc
gttaaggcgtttttaccagtaattgaatcatttggtttcgaaactgaccttcggtatcat
acacaaggacaagctttctgtgtatctgtttttgatcattggtcgattgtacctggtgat
cctcttgacaagtcagttgtgctgcgacctctggagccagctccagttcaacacctggct
cgtgaatttatggtcaaaacgaggcgtagaaagggaatgagtgaagatgtgagcatcaac
aagttcttcgacgatcctatgcttctagagctggcacgacaagatgcagacttgcagcag
atcttgtag
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