Physcomitrium patens (spreading earthmoss): 112285361
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Entry
112285361 CDS
T01041
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppp03036
]
112285361
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112285361
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112285361
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
112285361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Motif
Other DBs
NCBI-GeneID:
112285361
NCBI-ProteinID:
XP_024381871
LinkDB
All DBs
Position
8:complement(14338312..14349827)
Genome browser
AA seq
1650 aa
AA seq
DB search
MHEEETSPTVFAGLKRKLFSSAAVGTHPQVSHALKALARRRINTNKGLDLIREAQQKHNE
LDIIREQQKQNEFEIIRKQQEQNESKEQGENPSPLEGLGLHDDHCADTKAVDQLVQTVIC
PNYTPFSALAYLMDDALEEVSKLSSEKLSLISVELDQKQGKIIIFDTSKGLDSISISGWG
ASSSQKLESQGRCQNLNQGLSSANYGAISAGLYLGGSITISSRTKPLEDVSTLYLSRSTW
DGARSLTIGKRIGEVRSGTMEEENNSPHGSFRKVEITDLRLEVMQWNIEELRRKLKDFFF
PLIQESCEYDSRGSLAKPVTFMAMGLNLATIHWGQTAIAKSLSGDRKPFVIHMHLTDGAE
GRKGNATITFHYFPLIMGKESMSELRRRLYEDNPKIAIETYKLQRFSRVTVRWRGRLLLE
ENWKTISFLEGCKDLTLQQQQCYNRVIAFIDLDSGFLTTPSKVSLVADHCFTKSLMSCML
SQDSDESLRVKVDVSIQGQGWPLTPQLLGLEYHNWIQDCNRKYDTDEARNDQSKQIQHTC
ITKPHNKVELGIKYPVFQVAWSMKIQNLELNTRDPNRGPIRLKLVENNAPQPFFTLECFV
LTDSQGTSGSAHIICRPIYVSKDQGSTLVDGVDPTFYLRESKAFSLDESFATKFQEIDEI
TWSRYESELFGDYPAYVELLNEIEMHEFGLNGVIPINSSVEAGFQLPKEILAVVRPRSCA
RANSKNETSCSIEQRSIVFGVMELNLEVRFINKYISDEDALTEEQVTTSKTVYNCTTKPC
VRKGVQGLYSFVTNGTDLNTLFTTMGTYLLAFSVVGEKHRNVAPAVARINVSACEEVEHW
QLCSHPDACFKHPNHWKLKNIVTRIGKVIESPLYLSGFDVYNNRVALSNVPEELHFKVGQ
LDGEFLELSVAIPRECISLSANNATLELKDIEIGGGCLAQIATTYAAQLWILIHNFPVAS
YILTVLPGEPASVALTECDRLDNCLRPGQMIEKFVIQAFDDFKNVVENGSEIRVGLEGLQ
LVDKRGSRRQVVENGCIHLGGLLKVTAEYNSRGGTITVQSDKGRSLLALNFHTVYRSLRI
LKEPEEAYTGSQLEGLKVQVIDEDGNVDTKMDGSLHYLTVDWNSKLSIPLVCGVCSLPPI
NLPLVPGSWYGRVAHAVHPELFCALEVQVVSKLPSDNHLIPATPPNQPCLLMSLPQQLQL
NWNVKKEIDEKIESYPLRETSTQREEYERQLKDFIDRNTKMQRKLREQGRKVKRAEEELG
ILKRTKMEVDDMEALWKVELKTFESVSKAAEVQKDAKALCPSSQNNNTASQVIELLQKQG
DPPGSHAASVLLEAVVNNGNVFAAGGPGSDILGIVALLACVDNDILNRALVDFLGIEKML
MIVCRSEEGLKYLEKLESQSSMVDDLTLHAFARSRNRRINGTFRALVLNEASFYKRKDGL
PSVNEGHPQKLLLIPDPWPRDAPCPKGYIGYAVNLLRFNPQQLECYATSAKHSLRESLFF
QLFSYLQVYDTKEHMLAAQQFHTTGAVSLDGGLIHGKTYLEHVFGEEPAVKFPVLREEKH
EYQQTDSMLSSPNCPYHDKKVSTNMLELELTHRIKALHEETGYTNLCLLIKKMETKLVRA
RSKITVIVKEVNQEEDKKAEILRKVAELED
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgcacgaagaggagacgtcgccgacagtgtttgccggcctcaaacgcaagctcttctcc
tccgccgccgttggtacccatcctcaggtctctcatgcactgaaagctttagcaaggaga
cgaatcaatacgaacaaagggttggacctcatcagagaggcgcagcaaaagcataatgag
ttggacatcatccgagagcagcaaaagcagaatgagttcgaaatcatcaggaagcaacaa
gagcagaatgagtcgaaggaacagggcgaaaatccctctcctctcgaggggcttgggttg
cacgacgatcattgtgctgataccaaagcagtagaccaacttgttcaaactgtgatctgc
ccaaattatactcccttctcagctctagcttatctgatggatgatgcactagaggaagtt
tcgaaattaagctcggagaagctttcactcatcagtgttgaattggatcagaagcagggg
aagatcatcatcttcgacactagcaaaggcttggacagcatttccatctctggttgggga
gcttccagcagccagaagttggaatcacaaggacgttgtcagaatctcaatcaaggcttg
agcagcgctaattatggggccatcagtgctggtttatatcttggggggagcattacaatc
tcttctcgaacaaaacctttggaagacgtgtctactttatacctcagtagaagcacgtgg
gatggtgcaagaagtctcacaattgggaagagaattggtgaggttcgtagtggaaccatg
gaagaggaaaacaattcgccgcatgggagcttcagaaaggtggagatcactgacttaaga
ctggaagttatgcaatggaacatagaagagctgcgtcggaaactcaaagattttttcttt
ccactcattcaggaaagttgtgaatatgatagccgtgggtcacttgcaaaaccagttact
tttatggcaatgggattgaacctcgcaacgatacattggggtcagacggcaattgcgaaa
tcactctcaggagaccgaaaacctttcgtaatacacatgcatcttacagacggcgcagaa
ggtcgcaaagggaatgcgacaattacatttcattacttccccctcatcatgggaaaagaa
tcaatgagcgagttgagacgaaggttgtatgaggacaatccgaaaatcgccatagagaca
tacaaactccaaagattctcacgtgtgacagttcgatggcgaggaaggctattactggag
gaaaactggaaaactatctcctttttggaaggttgcaaagaccttaccttacagcagcag
cagtgctacaatcgagtaatcgccttcattgatttagacagcggattccttacaacacct
tcaaaggtgtcgttagtagctgaccattgcttcaccaagtcgttgatgtcctgcatgttg
tcgcaggatagcgacgaatccctaagggttaaagtggacgtaagtatccaaggacaaggg
tggcctctgacaccacaacttctgggtttggaataccacaattggattcaagattgcaat
cgaaagtatgacacggacgaagccagaaacgaccagagcaaacaaattcaacacacttgt
atcaccaaacctcataacaaggtcgaactgggcattaaatatccagtatttcaagtggca
tggagtatgaagatacagaacttagaactcaacaccagagatcctaaccgagggccaatc
agactgaagctggtggaaaataatgccccacagcctttctttactcttgagtgcttcgtg
ttgacggattctcaagggacctctggatcagcacacatcatttgtcgcccgatctatgtg
tccaaggatcaaggaagcacacttgtggatggtgtagatccaactttttacctgagggag
tcaaaagcgttctctcttgacgaatccttcgcaacgaagttccaagaaattgatgaaatc
acatggtcaagatacgagagcgaactttttggtgactatcccgcatacgtggagcttctt
aatgaaatagaaatgcacgaattcggattaaacggagttattccaatcaactcatcagtt
gaagcaggattccagctcccaaaagagattttagcagtagtgagaccaagaagctgtgca
agagctaactccaaaaatgagacttcatgctcgattgagcaaagatcaatcgtttttgga
gttatggaactgaatctcgaagtaagattcatcaataaatatatctctgatgaagatgcc
ttgacagaggagcaggtaacaacgtcaaagacagtgtacaattgcacgaccaagccatgt
gtgcggaaaggtgtgcagggcctctactcgttcgttaccaatggaaccgacctcaacaca
ttattcacaacgatgggaacttatttgctagccttttcagtggtcggtgagaagcacaga
aatgtggcaccagcagtggcacgaataaatgtttcagcatgtgaagaagtggagcattgg
cagttgtgctcccaccctgatgcctgctttaagcatcctaaccactggaaacttaagaac
attgtaactaggatcgggaaggtaattgaaagccccttgtatctttctggttttgatgtg
tacaacaatcgggtagcgctctcaaatgtccctgaagaactgcatttcaaagtgggtcag
ttggatggtgagttccttgagctttctgttgcgatacccagagagtgcatcagtttaagc
gccaacaatgctaccctcgagctgaaggatatagagatcggaggtggttgcttggcacag
atagccacaacttacgctgcacagttgtggattttgatccacaacttccctgtcgcttcg
tacatattaacggttttaccaggtgaaccagcatcagttgcgctgaccgaatgtgaccgc
ctagataattgcttacggcctggccagatgatcgagaagttcgtcatacaggcatttgat
gacttcaaaaacgtggtagaaaatggaagtgagatccgtgttggcttagagggcctccag
cttgtagacaaacgaggttcaagaagacaggttgttgagaatggatgtatccatctcgga
ggtcttctgaaagttaccgcagaatacaattcacgaggtggtacgataactgttcaatca
gataaagggagatctctgcttgcgctgaattttcacaccgtctacagatctctacgcatc
ttgaaggagccggaagaagcatacactggcagccagcttgagggattgaaggttcaagtt
attgacgaggatggaaatgtagataccaaaatggatgggtctctccactatctaaccgtc
gactggaactctaaattgtccatccctcttgtctgtggtgtttgctcactgccacctatc
aatttacccctcgttccaggaagttggtacggtcgagttgcacatgctgttcatccagag
ctcttctgtgctcttgaggtacaggttgtttctaagttgcctagtgacaatcacctcatt
ccggcaacaccaccaaatcaaccatgcttgctcatgtcacttccacaacaattgcagctg
aattggaacgtgaagaaggaaatagatgagaaaattgaaagttatcctttgcgtgaaacc
tctacacaacgtgaagagtatgagagacagctaaaagatttcattgatcgtaacacgaaa
atgcaaaggaaattacgagaacaaggaagaaaagtgaaaagagctgaagaggagcttggt
attcttaaacgcacgaaaatggaggttgatgatatggaagctctttggaaagtggagcta
aagacattcgagtccgtatctaaggcagctgaagtacaaaaagatgccaaagcgttatgt
ccaagctcccaaaacaataacacggcatcccaagtgatcgaacttcttcagaagcaaggt
gatcctcctggaagtcacgcagccagcgttcttctggaagctgttgtgaacaatggcaat
gttttcgctgcaggaggtcctggcagcgacattttgggcatagtggccctccttgcttgc
gtggacaatgatattcttaaccgtgccctggtggacttcctggggatagagaaaatgttg
atgattgtttgcaggtcagaggagggtttgaaatacctggaaaagctagagtcgcaatcg
tctatggtagacgacttgacattgcatgcatttgctcgcagcagaaacagaagaattaat
ggcaccttccgcgctctcgttctgaatgaagctagtttttacaagcgaaaagacgggtta
ccaagtgtgaacgaaggccatccccaaaaactactgctcattccggatccatggcctagg
gatgcaccatgtccgaagggatacattggctatgcagtcaacctgctccgttttaatcca
caacaacttgaatgctatgccacttcagccaagcacagcttacgcgaatcgctgtttttc
cagctgttttcttatcttcaagtctatgatactaaggagcacatgcttgctgctcagcag
ttccatacaactggagctgtttcacttgacggtggtctcatccatggcaaaacctatctt
gagcacgtttttggggaggaaccagcagtaaaatttccggtcttaagggaagaaaagcac
gaataccagcagactgattcaatgttgtctagcccgaattgcccttaccacgacaagaaa
gtctccacaaacatgttggaactagagcttacccacaggatcaaagccttgcacgaggag
acaggctacacgaatctttgtcttctcattaagaaaatggaaacaaagttagttcgagcc
cgcagtaaaatcacagtgatagtgaaggaagtgaaccaagaggaagacaagaaggctgaa
attttgaggaaagtcgcggagcttgaagattga
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